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Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations.
Klvana M, Pavlova M, Koudelakova T, Chaloupkova R, Dvorak P, Prokop Z, Stsiapanava A, Kuty M, Kuta-Smatanova I, Dohnalek J, Kulhanek P, Wade RC, Damborsky J. Klvana M, et al. Among authors: kuta smatanova i. J Mol Biol. 2009 Oct 9;392(5):1339-56. doi: 10.1016/j.jmb.2009.06.076. Epub 2009 Jul 3. J Mol Biol. 2009. PMID: 19577578
Crystallization and preliminary crystallographic characterization of the iron-regulated outer membrane lipoprotein FrpD from Neisseria meningitidis.
Sviridova E, Bumba L, Rezacova P, Prochazkova K, Kavan D, Bezouska K, Kuty M, Sebo P, Kuta Smatanova I. Sviridova E, et al. Among authors: kuta smatanova i. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Sep 1;66(Pt 9):1119-23. doi: 10.1107/S174430911003215X. Epub 2010 Aug 28. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010. PMID: 20823542 Free PMC article.
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of AHP2, a signal transmitter protein from Arabidopsis thaliana.
Degtjarik O, Dopitova R, Puehringer S, Nejedla E, Kuty M, Weiss MS, Hejatko J, Janda L, Kuta Smatanova I. Degtjarik O, et al. Among authors: kuta smatanova i. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Feb 1;69(Pt 2):158-61. doi: 10.1107/S174430911205186X. Epub 2013 Jan 31. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013. PMID: 23385758 Free PMC article.
Differences in crystallization of two LinB variants from Sphingobium japonicum UT26.
Degtjarik O, Chaloupkova R, Rezacova P, Kuty M, Damborsky J, Kuta Smatanova I. Degtjarik O, et al. Among authors: kuta smatanova i. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Mar 1;69(Pt 3):284-7. doi: 10.1107/S1744309113002467. Epub 2013 Feb 22. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013. PMID: 23519805 Free PMC article.
Crystallographic analysis of new psychrophilic haloalkane dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17.
Tratsiak K, Degtjarik O, Drienovska I, Chrast L, Rezacova P, Kuty M, Chaloupkova R, Damborsky J, Kuta Smatanova I. Tratsiak K, et al. Among authors: kuta smatanova i. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):683-8. doi: 10.1107/S1744309113012979. Epub 2013 May 25. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013. PMID: 23722854 Free PMC article.
1.2 Å resolution crystal structure of Escherichia coli WrbA holoprotein.
Kishko I, Carey J, Reha D, Brynda J, Winkler R, Harish B, Guerra R, Ettrichova O, Kukacka Z, Sheryemyetyeva O, Novak P, Kuty M, Kuta Smatanova I, Ettrich R, Lapkouski M. Kishko I, et al. Among authors: kuta smatanova i. Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1748-57. doi: 10.1107/S0907444913017162. Epub 2013 Aug 15. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 23999298
Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites.
Chaloupkova R, Prudnikova T, Rezacova P, Prokop Z, Koudelakova T, Daniel L, Brezovsky J, Ikeda-Ohtsubo W, Sato Y, Kuty M, Nagata Y, Kuta Smatanova I, Damborsky J. Chaloupkova R, et al. Among authors: kuta smatanova i. Acta Crystallogr D Biol Crystallogr. 2014 Jul;70(Pt 7):1884-97. doi: 10.1107/S1399004714009018. Epub 2014 Jun 29. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 25004965
34 results