Kuriata A - Search Results

1

Protocols for Rational Design of Protein Solubility and Aggregation Properties Using Aggrescan3D Standalone.

Kuriata A, Badaczewska-Dawid AE, Pujols J, Ventura S, Kmiecik S. Kuriata A, et al. Methods Mol Biol. 2022;2340:17-40. doi: 10.1007/978-1-0716-1546-1_2. Methods Mol Biol. 2022. PMID: 35167068

2

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.

Kuriata A, Gierut AM, Oleniecki T, Ciemny MP, Kolinski A, Kurcinski M, Kmiecik S. Kuriata A, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W338-W343. doi: 10.1093/nar/gky356. Nucleic Acids Res. 2018. PMID: 29762700 Free PMC article.

3

Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein Solubility.

Gil-Garcia M, Bañó-Polo M, Varejão N, Jamroz M, Kuriata A, Díaz-Caballero M, Lascorz J, Morel B, Navarro S, Reverter D, Kmiecik S, Ventura S. Gil-Garcia M, et al. Among authors: kuriata a. Mol Pharm. 2018 Sep 4;15(9):3846-3859. doi: 10.1021/acs.molpharmaceut.8b00341. Epub 2018 Aug 6. Mol Pharm. 2018. PMID: 30036481

4

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.

Kurcinski M, Oleniecki T, Ciemny MP, Kuriata A, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: kuriata a. Bioinformatics. 2019 Feb 15;35(4):694-695. doi: 10.1093/bioinformatics/bty685. Bioinformatics. 2019. PMID: 30101282 Free PMC article.

5

Aggrescan3D standalone package for structure-based prediction of protein aggregation properties.

Kuriata A, Iglesias V, Kurcinski M, Ventura S, Kmiecik S. Kuriata A, et al. Bioinformatics. 2019 Oct 1;35(19):3834-3835. doi: 10.1093/bioinformatics/btz143. Bioinformatics. 2019. PMID: 30825368

6

CABS-dock standalone: a toolbox for flexible protein-peptide docking.

Kurcinski M, Pawel Ciemny M, Oleniecki T, Kuriata A, Badaczewska-Dawid AE, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: kuriata a. Bioinformatics. 2019 Oct 15;35(20):4170-4172. doi: 10.1093/bioinformatics/btz185. Bioinformatics. 2019. PMID: 30865258 Free PMC article.

7

Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility.

Kuriata A, Iglesias V, Pujols J, Kurcinski M, Kmiecik S, Ventura S. Kuriata A, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W300-W307. doi: 10.1093/nar/gkz321. Nucleic Acids Res. 2019. PMID: 31049593 Free PMC article.

8

A3D 2.0 Update for the Prediction and Optimization of Protein Solubility.

Pujols J, Iglesias V, Santos J, Kuriata A, Kmiecik S, Ventura S. Pujols J, et al. Among authors: kuriata a. Methods Mol Biol. 2022;2406:65-84. doi: 10.1007/978-1-0716-1859-2_3. Methods Mol Biol. 2022. PMID: 35089550

9

A3D database: structure-based predictions of protein aggregation for the human proteome.

Badaczewska-Dawid AE, Garcia-Pardo J, Kuriata A, Pujols J, Ventura S, Kmiecik S. Badaczewska-Dawid AE, et al. Among authors: kuriata a. Bioinformatics. 2022 May 26;38(11):3121-3123. doi: 10.1093/bioinformatics/btac215. Bioinformatics. 2022. PMID: 35445695 Free PMC article.

10

A3DyDB: exploring structural aggregation propensities in the yeast proteome.

Garcia-Pardo J, Badaczewska-Dawid AE, Pintado-Grima C, Iglesias V, Kuriata A, Kmiecik S, Ventura S. Garcia-Pardo J, et al. Among authors: kuriata a. Microb Cell Fact. 2023 Sep 16;22(1):186. doi: 10.1186/s12934-023-02182-3. Microb Cell Fact. 2023. PMID: 37716955 Free PMC article.

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