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NPvis: An Interactive Visualizer of Peptidic Natural Product-MS/MS Matches.
Metabolites. 2022 Jul 29;12(8):706. doi: 10.3390/metabo12080706.
Metabolites. 2022.
PMID: 36005578
Free PMC article.
Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides.
Kunyavskaya O, Tagirdzhanov AM, Caraballo-Rodríguez AM, Nothias LF, Dorrestein PC, Korobeynikov A, Mohimani H, Gurevich A.
Kunyavskaya O, et al.
Metabolites. 2021 Oct 11;11(10):693. doi: 10.3390/metabo11100693.
Metabolites. 2021.
PMID: 34677408
Free PMC article.
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Complete genomic and epigenetic maps of human centromeres.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, Dvorkina T, Kunyavskaya O, Vollger MR, Rhie A, McCartney AM, Asri M, Lorig-Roach R, Shafin K, Lucas JK, Aganezov S, Olson D, de Lima LG, Potapova T, Hartley GA, Haukness M, Kerpedjiev P, Gusev F, Tigyi K, Brooks S, Young A, Nurk S, Koren S, Salama SR, Paten B, Rogaev EI, Streets A, Karpen GH, Dernburg AF, Sullivan BA, Straight AF, Wheeler TJ, Gerton JL, Eichler EE, Phillippy AM, Timp W, Dennis MY, O'Neill RJ, Zook JM, Schatz MC, Pevzner PA, Diekhans M, Langley CH, Alexandrov IA, Miga KH.
Altemose N, et al. Among authors: kunyavskaya o.
Science. 2022 Apr;376(6588):eabl4178. doi: 10.1126/science.abl4178. Epub 2022 Apr 1.
Science. 2022.
PMID: 35357911
Free PMC article.
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Automated annotation of human centromeres with HORmon.
Kunyavskaya O, Dvorkina T, Bzikadze AV, Alexandrov IA, Pevzner PA.
Kunyavskaya O, et al.
Genome Res. 2022 Jun;32(6):1137-1151. doi: 10.1101/gr.276362.121. Epub 2022 May 11.
Genome Res. 2022.
PMID: 35545449
Free PMC article.
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MGnify: the microbiome analysis resource in 2020.
Mitchell AL, Almeida A, Beracochea M, Boland M, Burgin J, Cochrane G, Crusoe MR, Kale V, Potter SC, Richardson LJ, Sakharova E, Scheremetjew M, Korobeynikov A, Shlemov A, Kunyavskaya O, Lapidus A, Finn RD.
Mitchell AL, et al. Among authors: kunyavskaya o.
Nucleic Acids Res. 2020 Jan 8;48(D1):D570-D578. doi: 10.1093/nar/gkz1035.
Nucleic Acids Res. 2020.
PMID: 31696235
Free PMC article.
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CentromereArchitect: inference and analysis of the architecture of centromeres.
Dvorkina T, Kunyavskaya O, Bzikadze AV, Alexandrov I, Pevzner PA.
Dvorkina T, et al. Among authors: kunyavskaya o.
Bioinformatics. 2021 Jul 12;37(Suppl_1):i196-i204. doi: 10.1093/bioinformatics/btab265.
Bioinformatics. 2021.
PMID: 34252949
Free PMC article.
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SGTK: a toolkit for visualization and assessment of scaffold graphs.
Kunyavskaya O, Prjibelski AD.
Kunyavskaya O, et al.
Bioinformatics. 2019 Jul 1;35(13):2303-2305. doi: 10.1093/bioinformatics/bty956.
Bioinformatics. 2019.
PMID: 30475983
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