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Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance.
Herold M, Martínez Arbas S, Narayanasamy S, Sheik AR, Kleine-Borgmann LAK, Lebrun LA, Kunath BJ, Roume H, Bessarab I, Williams RBH, Gillece JD, Schupp JM, Keim PS, Jäger C, Hoopmann MR, Moritz RL, Ye Y, Li S, Tang H, Heintz-Buschart A, May P, Muller EEL, Laczny CC, Wilmes P. Herold M, et al. Among authors: kunath bj. Nat Commun. 2020 Oct 19;11(1):5281. doi: 10.1038/s41467-020-19006-2. Nat Commun. 2020. PMID: 33077707 Free PMC article.
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.
Martínez Arbas S, Narayanasamy S, Herold M, Lebrun LA, Hoopmann MR, Li S, Lam TJ, Kunath BJ, Hicks ND, Liu CM, Price LB, Laczny CC, Gillece JD, Schupp JM, Keim PS, Moritz RL, Faust K, Tang H, Ye Y, Skupin A, May P, Muller EEL, Wilmes P. Martínez Arbas S, et al. Among authors: kunath bj. Nat Microbiol. 2021 Jan;6(1):123-135. doi: 10.1038/s41564-020-00794-8. Epub 2020 Nov 2. Nat Microbiol. 2021. PMID: 33139880 Free PMC article.
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen MØ, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Queiros PT, Reichl U, Renard BY, Schiebenhoefer H, Sczyrba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, von Bergen M, Wilmes P, Wolf M, Martens L, Muth T. Van Den Bossche T, et al. Among authors: kunath bj. Nat Commun. 2021 Dec 15;12(1):7305. doi: 10.1038/s41467-021-27542-8. Nat Commun. 2021. PMID: 34911965 Free PMC article.
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.
Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D, Eijsink VGH, Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, Uzzau S, Wilmes P, Hettich RL, Armengaud J. Van Den Bossche T, et al. Among authors: kunath bj. Microbiome. 2021 Dec 20;9(1):243. doi: 10.1186/s40168-021-01176-w. Microbiome. 2021. PMID: 34930457 Free PMC article.
Long-Read Metagenomics and CAZyme Discovery.
Ferrillo A, Kobel CM, Vera-Ponce de León A, La Rosa SL, Kunath BJ, Pope PB, Hagen LH. Ferrillo A, et al. Among authors: kunath bj. Methods Mol Biol. 2023;2657:253-284. doi: 10.1007/978-1-0716-3151-5_19. Methods Mol Biol. 2023. PMID: 37149537
18 results