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Apple whole genome sequences: recent advances and new prospects.
Peace CP, Bianco L, Troggio M, van de Weg E, Howard NP, Cornille A, Durel CE, Myles S, Migicovsky Z, Schaffer RJ, Costes E, Fazio G, Yamane H, van Nocker S, Gottschalk C, Costa F, Chagné D, Zhang X, Patocchi A, Gardiner SE, Hardner C, Kumar S, Laurens F, Bucher E, Main D, Jung S, Vanderzande S. Peace CP, et al. Among authors: kumar s. Hortic Res. 2019 Apr 5;6:59. doi: 10.1038/s41438-019-0141-7. eCollection 2019. Hortic Res. 2019. PMID: 30962944 Free PMC article. Review.
Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.
Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Chagné D, et al. Among authors: kumar s. PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21. PLoS One. 2012. PMID: 22363718 Free PMC article.
An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes.
Chagné D, Lin-Wang K, Espley RV, Volz RK, How NM, Rouse S, Brendolise C, Carlisle CM, Kumar S, De Silva N, Micheletti D, McGhie T, Crowhurst RN, Storey RD, Velasco R, Hellens RP, Gardiner SE, Allan AC. Chagné D, et al. Among authors: kumar s. Plant Physiol. 2013 Jan;161(1):225-39. doi: 10.1104/pp.112.206771. Epub 2012 Oct 24. Plant Physiol. 2013. PMID: 23096157 Free PMC article.
A microRNA allele that emerged prior to apple domestication may underlie fruit size evolution.
Yao JL, Xu J, Cornille A, Tomes S, Karunairetnam S, Luo Z, Bassett H, Whitworth C, Rees-George J, Ranatunga C, Snirc A, Crowhurst R, de Silva N, Warren B, Deng C, Kumar S, Chagné D, Bus VG, Volz RK, Rikkerink EH, Gardiner SE, Giraud T, MacDiarmid R, Gleave AP. Yao JL, et al. Among authors: kumar s. Plant J. 2015 Oct;84(2):417-27. doi: 10.1111/tpj.13021. Plant J. 2015. PMID: 26358530 Free article.
Accuracy and responses of genomic selection on key traits in apple breeding.
Muranty H, Troggio M, Sadok IB, Rifaï MA, Auwerkerken A, Banchi E, Velasco R, Stevanato P, van de Weg WE, Di Guardo M, Kumar S, Laurens F, Bink MC. Muranty H, et al. Among authors: kumar s. Hortic Res. 2015 Dec 23;2:15060. doi: 10.1038/hortres.2015.60. eCollection 2015. Hortic Res. 2015. PMID: 26744627 Free PMC article.
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