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Ten quick tips for building FAIR workflows.
de Visser C, Johansson LF, Kulkarni P, Mei H, Neerincx P, Joeri van der Velde K, Horvatovich P, van Gool AJ, Swertz MA, Hoen PAC', Niehues A. de Visser C, et al. Among authors: kulkarni p. PLoS Comput Biol. 2023 Sep 28;19(9):e1011369. doi: 10.1371/journal.pcbi.1011369. eCollection 2023 Sep. PLoS Comput Biol. 2023. PMID: 37768885 Free PMC article.
Proteomic profiling of striatal tissue of a rat model of Parkinson's disease after implantation of collagen-encapsulated human umbilical cord mesenchymal stem cells.
Santaella A, Wessels HJCT, Kulkarni P, Gloerich J, Kuiperij B, Bloem BR, van Gool AJ, Cabré S, Alamilla V, Verbeek MM. Santaella A, et al. Among authors: kulkarni p. J Tissue Eng Regen Med. 2020 Aug;14(8):1077-1086. doi: 10.1002/term.3081. Epub 2020 Jun 26. J Tissue Eng Regen Med. 2020. PMID: 32548924 Free PMC article.
Plasma glycoproteomics delivers high-specificity disease biomarkers by detecting site-specific glycosylation abnormalities.
Wessels HJCT, Kulkarni P, van Dael M, Suppers A, Willems E, Zijlstra F, Kragt E, Gloerich J, Schmit PO, Pengelley S, Marx K, van Gool AJ, Lefeber DJ. Wessels HJCT, et al. Among authors: kulkarni p. J Adv Res. 2023 Sep 6:S2090-1232(23)00239-4. doi: 10.1016/j.jare.2023.09.002. Online ahead of print. J Adv Res. 2023. PMID: 37683725 Free article.
N-linked glycosylation of the M-protein variable region: glycoproteogenomics reveals a new layer of personalized complexity in multiple myeloma.
Langerhorst P, Baerenfaenger M, Kulkarni P, Nadal S, Wijnands C, Post MA, Noori S, vanDuijn MM, Joosten I, Dejoie T, van Gool AJ, Gloerich J, Lefeber DJ, Wessels HJCT, Jacobs JFM. Langerhorst P, et al. Among authors: kulkarni p. Clin Chem Lab Med. 2024 Feb 9. doi: 10.1515/cclm-2023-1189. Online ahead of print. Clin Chem Lab Med. 2024. PMID: 38332688 Free article.
Application of metabolite set enrichment analysis on untargeted metabolomics data prioritises relevant pathways and detects novel biomarkers for inherited metabolic disorders.
Hoegen B, Hampstead JE, Engelke UFH, Kulkarni P, Wevers RA, Brunner HG, Coene KLM, Gilissen C. Hoegen B, et al. Among authors: kulkarni p. J Inherit Metab Dis. 2022 Jul;45(4):682-695. doi: 10.1002/jimd.12522. Epub 2022 May 22. J Inherit Metab Dis. 2022. PMID: 35546254 Free PMC article.
Variable Selection in Untargeted Metabolomics and the Danger of Sparsity.
Tinnevelt GH, Engelke UFH, Wevers RA, Veenhuis S, Willemsen MA, Coene KLM, Kulkarni P, Jansen JJ. Tinnevelt GH, et al. Among authors: kulkarni p. Metabolites. 2020 Nov 17;10(11):470. doi: 10.3390/metabo10110470. Metabolites. 2020. PMID: 33213095 Free PMC article.
Untargeted metabolomics and infrared ion spectroscopy identify biomarkers for pyridoxine-dependent epilepsy.
Engelke UF, van Outersterp RE, Merx J, van Geenen FA, van Rooij A, Berden G, Huigen MC, Kluijtmans LA, Peters TM, Al-Shekaili HH, Leavitt BR, de Vrieze E, Broekman S, van Wijk E, Tseng LA, Kulkarni P, Rutjes FP, Mecinović J, Struys EA, Jansen LA, Gospe SM Jr, Mercimek-Andrews S, Hyland K, Willemsen MA, Bok LA, van Karnebeek CD, Wevers RA, Boltje TJ, Oomens J, Martens J, Coene KL. Engelke UF, et al. Among authors: kulkarni p. J Clin Invest. 2021 Aug 2;131(15):e148272. doi: 10.1172/JCI148272. J Clin Invest. 2021. PMID: 34138754 Free PMC article.
1,399 results