Kuipers RKP - Search Results

1

CorNet: Assigning function to networks of co-evolving residues by automated literature mining.

van den Bergh T, Tamo G, Nobili A, Tao Y, Tan T, Bornscheuer UT, Kuipers RKP, Vroling B, de Jong RM, Subramanian K, Schaap PJ, Desmet T, Nidetzky B, Vriend G, Joosten HJ. van den Bergh T, et al. Among authors: kuipers rkp. PLoS One. 2017 May 18;12(5):e0176427. doi: 10.1371/journal.pone.0176427. eCollection 2017. PLoS One. 2017. PMID: 28545124 Free PMC article.

2

NewProt - a protein engineering portal.

Schwarte A, Genz M, Skalden L, Nobili A, Vickers C, Melse O, Kuipers R, Joosten HJ, Stourac J, Bendl J, Black J, Haase P, Baakman C, Damborsky J, Bornscheuer U, Vriend G, Venselaar H. Schwarte A, et al. Protein Eng Des Sel. 2017 Jun 1;30(6):441-447. doi: 10.1093/protein/gzx024. Protein Eng Des Sel. 2017. PMID: 28475759

3

Novel tools for extraction and validation of disease-related mutations applied to Fabry disease.

Kuipers R, van den Bergh T, Joosten HJ, Lekanne dit Deprez RH, Mannens MM, Schaap PJ. Kuipers R, et al. Hum Mutat. 2010 Sep;31(9):1026-32. doi: 10.1002/humu.21317. Hum Mutat. 2010. PMID: 20629180

4

3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities.

Kuipers RK, Joosten HJ, van Berkel WJ, Leferink NG, Rooijen E, Ittmann E, van Zimmeren F, Jochens H, Bornscheuer U, Vriend G, dos Santos VA, Schaap PJ. Kuipers RK, et al. Proteins. 2010 Jul;78(9):2101-13. doi: 10.1002/prot.22725. Proteins. 2010. PMID: 20455266

5

Correlated mutation analyses on super-family alignments reveal functionally important residues.

Kuipers RK, Joosten HJ, Verwiel E, Paans S, Akerboom J, van der Oost J, Leferink NG, van Berkel WJ, Vriend G, Schaap PJ. Kuipers RK, et al. Proteins. 2009 Aug 15;76(3):608-16. doi: 10.1002/prot.22374. Proteins. 2009. PMID: 19274741

6

Increasing the thermostability of sucrose phosphorylase by a combination of sequence- and structure-based mutagenesis.

Cerdobbel A, De Winter K, Aerts D, Kuipers R, Joosten HJ, Soetaert W, Desmet T. Cerdobbel A, et al. Protein Eng Des Sel. 2011 Nov;24(11):829-34. doi: 10.1093/protein/gzr042. Epub 2011 Sep 6. Protein Eng Des Sel. 2011. PMID: 21900303

7

Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces.

Venselaar H, Te Beek TA, Kuipers RK, Hekkelman ML, Vriend G. Venselaar H, et al. BMC Bioinformatics. 2010 Nov 8;11:548. doi: 10.1186/1471-2105-11-548. BMC Bioinformatics. 2010. PMID: 21059217 Free PMC article.

8

Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.

Narayanan B, Niu W, Joosten HJ, Li Z, Kuipers RK, Schaap PJ, Dunaway-Mariano D, Herzberg O. Narayanan B, et al. J Mol Biol. 2009 Feb 20;386(2):486-503. doi: 10.1016/j.jmb.2008.12.037. Epub 2008 Dec 24. J Mol Biol. 2009. PMID: 19133276

9

The alpha/beta-hydrolase fold 3DM database (ABHDB) as a tool for protein engineering.

Kourist R, Jochens H, Bartsch S, Kuipers R, Padhi SK, Gall M, Böttcher D, Joosten HJ, Bornscheuer UT. Kourist R, et al. Chembiochem. 2010 Aug 16;11(12):1635-43. doi: 10.1002/cbic.201000213. Chembiochem. 2010. PMID: 20593436 Review. No abstract available.

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