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Editorial: Applications and Methods in Genomic Networks.
Fagny M, Glass K, Kuijjer ML. Fagny M, et al. Among authors: kuijjer ml. Front Genet. 2022 Jun 8;13:936015. doi: 10.3389/fgene.2022.936015. eCollection 2022. Front Genet. 2022. PMID: 35754814 Free PMC article. No abstract available.
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.
Ben Guebila M, Wang T, Lopes-Ramos CM, Fanfani V, Weighill D, Burkholz R, Schlauch D, Paulson JN, Altenbuchinger M, Shutta KH, Sonawane AR, Lim J, Calderer G, van IJzendoorn DGP, Morgan D, Marin A, Chen CY, Song Q, Saha E, DeMeo DL, Padi M, Platig J, Kuijjer ML, Glass K, Quackenbush J. Ben Guebila M, et al. Among authors: kuijjer ml. Genome Biol. 2023 Mar 9;24(1):45. doi: 10.1186/s13059-023-02877-1. Genome Biol. 2023. PMID: 36894939 Free PMC article.
Estimating Sample-Specific Regulatory Networks.
Kuijjer ML, Tung MG, Yuan G, Quackenbush J, Glass K. Kuijjer ML, et al. iScience. 2019 Apr 26;14:226-240. doi: 10.1016/j.isci.2019.03.021. Epub 2019 Mar 28. iScience. 2019. PMID: 30981959 Free PMC article.
Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell hemangioma in Ollier disease and Maffucci syndrome.
Pansuriya TC, van Eijk R, d'Adamo P, van Ruler MA, Kuijjer ML, Oosting J, Cleton-Jansen AM, van Oosterwijk JG, Verbeke SL, Meijer D, van Wezel T, Nord KH, Sangiorgi L, Toker B, Liegl-Atzwanger B, San-Julian M, Sciot R, Limaye N, Kindblom LG, Daugaard S, Godfraind C, Boon LM, Vikkula M, Kurek KC, Szuhai K, French PJ, Bovée JV. Pansuriya TC, et al. Among authors: kuijjer ml. Nat Genet. 2011 Nov 6;43(12):1256-61. doi: 10.1038/ng.1004. Nat Genet. 2011. PMID: 22057234 Free PMC article.
Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas.
van IJzendoorn DGP, Szuhai K, Briaire-de Bruijn IH, Kostine M, Kuijjer ML, Bovée JVMG. van IJzendoorn DGP, et al. Among authors: kuijjer ml. PLoS Comput Biol. 2019 Feb 20;15(2):e1006826. doi: 10.1371/journal.pcbi.1006826. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30785874 Free PMC article.
PUMA: PANDA Using MicroRNA Associations.
Kuijjer ML, Fagny M, Marin A, Quackenbush J, Glass K. Kuijjer ML, et al. Bioinformatics. 2020 Sep 15;36(18):4765-4773. doi: 10.1093/bioinformatics/btaa571. Bioinformatics. 2020. PMID: 32860050 Free PMC article.
55 results