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Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population.
Motoike IN, Matsumoto M, Danjoh I, Katsuoka F, Kojima K, Nariai N, Sato Y, Yamaguchi-Kabata Y, Ito S, Kudo H, Nishijima I, Nishikawa S, Pan X, Saito R, Saito S, Saito T, Shirota M, Tsuda K, Yokozawa J, Igarashi K, Minegishi N, Tanabe O, Fuse N, Nagasaki M, Kinoshita K, Yasuda J, Yamamoto M. Motoike IN, et al. Among authors: kudo h. BMC Genomics. 2014 Aug 10;15(1):673. doi: 10.1186/1471-2164-15-673. BMC Genomics. 2014. PMID: 25109789 Free PMC article.
Adjustment of Cell-Type Composition Minimizes Systematic Bias in Blood DNA Methylation Profiles Derived by DNA Collection Protocols.
Shiwa Y, Hachiya T, Furukawa R, Ohmomo H, Ono K, Kudo H, Hata J, Hozawa A, Iwasaki M, Matsuda K, Minegishi N, Satoh M, Tanno K, Yamaji T, Wakai K, Hitomi J, Kiyohara Y, Kubo M, Tanaka H, Tsugane S, Yamamoto M, Sobue K, Shimizu A. Shiwa Y, et al. Among authors: kudo h. PLoS One. 2016 Jan 22;11(1):e0147519. doi: 10.1371/journal.pone.0147519. eCollection 2016. PLoS One. 2016. PMID: 26799745 Free PMC article.
Biobank Establishment and Sample Management in the Tohoku Medical Megabank Project.
Minegishi N, Nishijima I, Nobukuni T, Kudo H, Ishida N, Terakawa T, Kumada K, Yamashita R, Katsuoka F, Ogishima S, Suzuki K, Sasaki M, Satoh M, Tohoku Medical Megabank Project Study Group, Yamamoto M. Minegishi N, et al. Among authors: kudo h. Tohoku J Exp Med. 2019 May;248(1):45-55. doi: 10.1620/tjem.248.45. Tohoku J Exp Med. 2019. PMID: 31130587 Free article.
Landscape of electrophilic and inflammatory stress-mediated gene regulation in human lymphoblastoid cell lines.
Ishida N, Aoki Y, Katsuoka F, Nishijima I, Nobukuni T, Anzawa H, Bin L, Tsuda M, Kumada K, Kudo H, Terakawa T, Otsuki A, Kinoshita K, Yamashita R, Minegishi N, Yamamoto M. Ishida N, et al. Among authors: kudo h. Free Radic Biol Med. 2020 Dec;161:71-83. doi: 10.1016/j.freeradbiomed.2020.09.023. Epub 2020 Oct 2. Free Radic Biol Med. 2020. PMID: 33011271 Free article.
Japonica Array NEO with increased genome-wide coverage and abundant disease risk SNPs.
Sakurai-Yageta M, Kumada K, Gocho C, Makino S, Uruno A, Tadaka S, Motoike IN, Kimura M, Ito S, Otsuki A, Narita A, Kudo H, Aoki Y, Danjoh I, Yasuda J, Kawame H, Minegishi N, Koshiba S, Fuse N, Tamiya G, Yamamoto M, Kinoshita K. Sakurai-Yageta M, et al. Among authors: kudo h. J Biochem. 2021 Oct 12;170(3):399-410. doi: 10.1093/jb/mvab060. J Biochem. 2021. PMID: 34131746 Free PMC article.
dbTMM: an integrated database of large-scale cohort, genome and clinical data for the Tohoku Medical Megabank Project.
Ogishima S, Nagaie S, Mizuno S, Ishiwata R, Iida K, Shimokawa K, Takai-Igarashi T, Nakamura N, Nagase S, Nakamura T, Tsuchiya N, Nakaya N, Murakami K, Ueno F, Onuma T, Ishikuro M, Obara T, Mugikura S, Tomita H, Uruno A, Kobayashi T, Tsuboi A, Tadaka S, Katsuoka F, Narita A, Sakurai M, Makino S, Tamiya G, Aoki Y, Shimizu R, Motoike IN, Koshiba S, Minegishi N, Kumada K, Nobukuni T, Suzuki K, Danjoh I, Nagami F, Tanno K, Ohmomo H, Asahi K, Shimizu A, Hozawa A, Kuriyama S; Tohoku Medical Megabank Project Study Group; Fuse N, Tominaga T, Kure S, Yaegashi N, Kinoshita K, Sasaki M, Tanaka H, Yamamoto M. Ogishima S, et al. Hum Genome Var. 2021 Dec 10;8(1):44. doi: 10.1038/s41439-021-00175-5. Hum Genome Var. 2021. PMID: 34887386 Free PMC article.
Reduced antiviral seropositivity among patients with inflammatory bowel disease treated with immunosuppressive agents.
Shiga H, Takahashi T, Shiraki M, Kojima Y, Tsuji T, Takagi S, Hiramoto K, Yokoyama N, Sugimura M, Iwabuchi M, Endo K, Onodera M, Sato Y, Shimodaira Y, Nomura E, Kikuchi T, Chiba H, Oomori S, Kudo H, Kumada K, Nagaie S, Ogishima S, Nagami F, Shimoyama Y, Moroi R, Kuroha M, Kakuta Y, Ishige T, Kinouchi Y, Masamune A. Shiga H, et al. Among authors: kudo h. Scand J Gastroenterol. 2023 Apr;58(4):360-367. doi: 10.1080/00365521.2022.2132831. Epub 2022 Oct 12. Scand J Gastroenterol. 2023. PMID: 36222610
Plasma metabolic disturbances during pregnancy and postpartum in women with depression.
Yu Z, Matsukawa N, Saigusa D, Motoike IN, Ono C, Okamura Y, Onuma T, Takahashi Y, Sakai M, Kudo H, Obara T, Murakami K, Shirota M, Kikuchi S, Kobayashi N, Kikuchi Y, Sugawara J, Minegishi N, Ogishima S, Kinoshita K, Yamamoto M, Yaegashi N, Kuriyama S, Koshiba S, Tomita H. Yu Z, et al. Among authors: kudo h. iScience. 2022 Nov 24;25(12):105666. doi: 10.1016/j.isci.2022.105666. eCollection 2022 Dec 22. iScience. 2022. PMID: 36505921 Free PMC article.
896 results