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In vivo structure and dynamics of the SARS-CoV-2 RNA genome.
Zhang Y, Huang K, Xie D, Lau JY, Shen W, Li P, Wang D, Zou Z, Shi S, Ren H, Wang Y, Mao Y, Jin M, Kudla G, Zhao Z. Zhang Y, et al. Among authors: kudla g. Nat Commun. 2021 Sep 28;12(1):5695. doi: 10.1038/s41467-021-25999-1. Nat Commun. 2021. PMID: 34584097 Free PMC article.
COMRADES determines in vivo RNA structures and interactions.
Ziv O, Gabryelska MM, Lun ATL, Gebert LFR, Sheu-Gruttadauria J, Meredith LW, Liu ZY, Kwok CK, Qin CF, MacRae IJ, Goodfellow I, Marioni JC, Kudla G, Miska EA. Ziv O, et al. Among authors: kudla g. Nat Methods. 2018 Oct;15(10):785-788. doi: 10.1038/s41592-018-0121-0. Epub 2018 Sep 10. Nat Methods. 2018. PMID: 30202058 Free PMC article.
Global mapping of RNA homodimers in living cells.
Gabryelska MM, Badrock AP, Lau JY, O'Keefe RT, Crow YJ, Kudla G. Gabryelska MM, et al. Among authors: kudla g. Genome Res. 2022 May;32(5):956-967. doi: 10.1101/gr.275900.121. Epub 2022 Mar 24. Genome Res. 2022. PMID: 35332098 Free PMC article.
RNA Conformation Capture by Proximity Ligation.
Kudla G, Wan Y, Helwak A. Kudla G, et al. Annu Rev Genomics Hum Genet. 2020 Aug 31;21:81-100. doi: 10.1146/annurev-genom-120219-073756. Epub 2020 Apr 22. Annu Rev Genomics Hum Genet. 2020. PMID: 32320281 Review.
Causes and Consequences of Purifying Selection on SARS-CoV-2.
Morales AC, Rice AM, Ho AT, Mordstein C, Mühlhausen S, Watson S, Cano L, Young B, Kudla G, Hurst LD. Morales AC, et al. Among authors: kudla g. Genome Biol Evol. 2021 Oct 1;13(10):evab196. doi: 10.1093/gbe/evab196. Genome Biol Evol. 2021. PMID: 34427640 Free PMC article.
Codon usage influences fitness through RNA toxicity.
Mittal P, Brindle J, Stephen J, Plotkin JB, Kudla G. Mittal P, et al. Among authors: kudla g. Proc Natl Acad Sci U S A. 2018 Aug 21;115(34):8639-8644. doi: 10.1073/pnas.1810022115. Epub 2018 Aug 6. Proc Natl Acad Sci U S A. 2018. PMID: 30082392 Free PMC article.
Codon Usage and Splicing Jointly Influence mRNA Localization.
Mordstein C, Savisaar R, Young RS, Bazile J, Talmane L, Luft J, Liss M, Taylor MS, Hurst LD, Kudla G. Mordstein C, et al. Among authors: kudla g. Cell Syst. 2020 Apr 22;10(4):351-362.e8. doi: 10.1016/j.cels.2020.03.001. Epub 2020 Apr 9. Cell Syst. 2020. PMID: 32275854 Free PMC article.
49 results