Kryshtafovych A - Search Results

1

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts.

Björkholm P, Daniluk P, Kryshtafovych A, Fidelis K, Andersson R, Hvidsten TR. Björkholm P, et al. Among authors: kryshtafovych a. Bioinformatics. 2009 May 15;25(10):1264-70. doi: 10.1093/bioinformatics/btp149. Epub 2009 Mar 16. Bioinformatics. 2009. PMID: 19289446 Free PMC article.

2

Tertiary structure assessment at CASP15.

Simpkin AJ, Mesdaghi S, Sánchez Rodríguez F, Elliott L, Murphy DL, Kryshtafovych A, Keegan RM, Rigden DJ. Simpkin AJ, et al. Among authors: kryshtafovych a. Proteins. 2023 Dec;91(12):1616-1635. doi: 10.1002/prot.26593. Epub 2023 Sep 25. Proteins. 2023. PMID: 37746927 Free PMC article.

3

To split or not to split: CASP15 targets and their processing into tertiary structure evaluation units.

Kryshtafovych A, Rigden DJ. Kryshtafovych A, et al. Proteins. 2023 Dec;91(12):1558-1570. doi: 10.1002/prot.26533. Epub 2023 May 31. Proteins. 2023. PMID: 37254889

4

RNA target highlights in CASP15: Evaluation of predicted models by structure providers.

Kretsch RC, Andersen ES, Bujnicki JM, Chiu W, Das R, Luo B, Masquida B, McRae EKS, Schroeder GM, Su Z, Wedekind JE, Xu L, Zhang K, Zheludev IN, Moult J, Kryshtafovych A. Kretsch RC, et al. Among authors: kryshtafovych a. Proteins. 2023 Dec;91(12):1600-1615. doi: 10.1002/prot.26550. Epub 2023 Jul 19. Proteins. 2023. PMID: 37466021

5

The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.

Ozden B, Kryshtafovych A, Karaca E. Ozden B, et al. Among authors: kryshtafovych a. Proteins. 2023 Dec;91(12):1636-1657. doi: 10.1002/prot.26598. Epub 2023 Oct 20. Proteins. 2023. PMID: 37861057

6

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins.

Hvidsten TR, Kryshtafovych A, Komorowski J, Fidelis K. Hvidsten TR, et al. Among authors: kryshtafovych a. Bioinformatics. 2003 Oct;19 Suppl 2:ii81-91. doi: 10.1093/bioinformatics/btg1064. Bioinformatics. 2003. PMID: 14534176

7

Discovering regulatory binding-site modules using rule-based learning.

Hvidsten TR, Wilczyński B, Kryshtafovych A, Tiuryn J, Komorowski J, Fidelis K. Hvidsten TR, et al. Among authors: kryshtafovych a. Genome Res. 2005 Jun;15(6):856-66. doi: 10.1101/gr.3760605. Genome Res. 2005. PMID: 15930496 Free PMC article.

8

CASP6 data processing and automatic evaluation at the protein structure prediction center.

Kryshtafovych A, Milostan M, Szajkowski L, Daniluk P, Fidelis K. Kryshtafovych A, et al. Proteins. 2005;61 Suppl 7:19-23. doi: 10.1002/prot.20718. Proteins. 2005. PMID: 16187343

9

System for accepting server predictions in CASP6.

Eyrich VA, Kryshtafovych A, Milostan M, Fidelis K. Eyrich VA, et al. Among authors: kryshtafovych a. Proteins. 2005;61 Suppl 7:24-26. doi: 10.1002/prot.20719. Proteins. 2005. PMID: 16187344

10

Progress over the first decade of CASP experiments.

Kryshtafovych A, Venclovas Č, Fidelis K, Moult J. Kryshtafovych A, et al. Proteins. 2005;61 Suppl 7:225-236. doi: 10.1002/prot.20740. Proteins. 2005. PMID: 16187365

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