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Towards complete and error-free genome assemblies of all vertebrate species.
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW 3rd, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B,… See abstract for full author list ➔ Rhie A, et al. Among authors: kraus rhs. Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28. Nature. 2021. PMID: 33911273 Free PMC article.
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications.
Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, Betteridge E, Dolucan J, Corton C, Bista I, Torrance J, Tracey A, Wood J, Uliano-Silva M, Howe K, McCarthy S, Winkler S, Kwak W, Korlach J, Fungtammasan A, Fordham D, Costa V, Mayes S, Chiara M, Horner DS, Myers E, Durbin R, Achilli A, Braun EL, Phillippy AM, Jarvis ED; Vertebrate Genomes Project Consortium. Formenti G, et al. Genome Biol. 2021 Apr 29;22(1):120. doi: 10.1186/s13059-021-02336-9. Genome Biol. 2021. PMID: 33910595 Free PMC article.
A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck).
Mueller RC, Ellström P, Howe K, Uliano-Silva M, Kuo RI, Miedzinska K, Warr A, Fedrigo O, Haase B, Mountcastle J, Chow W, Torrance J, Wood JMD, Järhult JD, Naguib MM, Olsen B, Jarvis ED, Smith J, Eöry L, Kraus RHS. Mueller RC, et al. Among authors: kraus rhs. Gigascience. 2021 Dec 20;10(12):giab081. doi: 10.1093/gigascience/giab081. Gigascience. 2021. PMID: 34927191 Free PMC article.
Reference genomes for conservation.
Paez S, Kraus RHS, Shapiro B, Gilbert MTP, Jarvis ED; Vertebrate Genomes Project Conservation Group; Al-Ajli FO, Ceballos G, Crawford AJ, Fedrigo O, Johnson RN, Johnson WE, Marques-Bonet T, Morin PA, Mueller RC, Ryder OA, Teeling EC, Venkatesh B. Paez S, et al. Among authors: kraus rhs. Science. 2022 Jul 22;377(6604):364-366. doi: 10.1126/science.abm8127. Epub 2022 Jul 21. Science. 2022. PMID: 35862547
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species.
Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim KW, Sheng Z, An Y, Searle S, Herrero J, Groenen MAM, Crooijmans RPMA, Faraut T, Cai Q, Webster RG, Aldridge JR, Warren WC, Bartschat S, Kehr S, Marz M, Stadler PF, Smith J, Kraus RHS, Zhao Y, Ren L, Fei J, Morisson M, Kaiser P, Griffin DK, Rao M, Pitel F, Wang J, Li N. Huang Y, et al. Among authors: kraus rhs. Nat Genet. 2013 Jul;45(7):776-783. doi: 10.1038/ng.2657. Epub 2013 Jun 9. Nat Genet. 2013. PMID: 23749191 Free PMC article.
Comparative Genomics of the Waterfowl Innate Immune System.
Jax E, Franchini P, Sekar V, Ottenburghs J, Monné Parera D, Kellenberger RT, Magor KE, Müller I, Wikelski M, Kraus RHS. Jax E, et al. Among authors: kraus rhs. Mol Biol Evol. 2022 Aug 3;39(8):msac160. doi: 10.1093/molbev/msac160. Mol Biol Evol. 2022. PMID: 35880574 Free PMC article.
Health monitoring in birds using bio-loggers and whole blood transcriptomics.
Jax E, Müller I, Börno S, Borlinghaus H, Eriksson G, Fricke E, Timmermann B, Pendl H, Fiedler W, Klein K, Schreiber F, Wikelski M, Magor KE, Kraus RHS. Jax E, et al. Among authors: kraus rhs. Sci Rep. 2021 May 24;11(1):10815. doi: 10.1038/s41598-021-90212-8. Sci Rep. 2021. PMID: 34031452 Free PMC article.
Targeted resequencing of coding DNA sequences for SNP discovery in nonmodel species.
Förster DW, Bull JK, Lenz D, Autenrieth M, Paijmans JLA, Kraus RHS, Nowak C, Bayerl H, Kuehn R, Saveljev AP, Sindičić M, Hofreiter M, Schmidt K, Fickel J. Förster DW, et al. Among authors: kraus rhs. Mol Ecol Resour. 2018 Nov;18(6):1356-1373. doi: 10.1111/1755-0998.12924. Epub 2018 Jul 30. Mol Ecol Resour. 2018. PMID: 29978939
48 results