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MGnify: the microbiome sequence data analysis resource in 2023.
Richardson L, Allen B, Baldi G, Beracochea M, Bileschi ML, Burdett T, Burgin J, Caballero-Pérez J, Cochrane G, Colwell LJ, Curtis T, Escobar-Zepeda A, Gurbich TA, Kale V, Korobeynikov A, Raj S, Rogers AB, Sakharova E, Sanchez S, Wilkinson DJ, Finn RD. Richardson L, et al. Among authors: korobeynikov a. Nucleic Acids Res. 2023 Jan 6;51(D1):D753-D759. doi: 10.1093/nar/gkac1080. Nucleic Acids Res. 2023. PMID: 36477304 Free PMC article.
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.
Nurk S, Bankevich A, Antipov D, Gurevich AA, Korobeynikov A, Lapidus A, Prjibelski AD, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, Clingenpeel SR, Woyke T, McLean JS, Lasken R, Tesler G, Alekseyev MA, Pevzner PA. Nurk S, et al. Among authors: korobeynikov a. J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084. J Comput Biol. 2013. PMID: 24093227 Free PMC article.
ExSPAnder: a universal repeat resolver for DNA fragment assembly.
Prjibelski AD, Vasilinetc I, Bankevich A, Gurevich A, Krivosheeva T, Nurk S, Pham S, Korobeynikov A, Lapidus A, Pevzner PA. Prjibelski AD, et al. Among authors: korobeynikov a. Bioinformatics. 2014 Jun 15;30(12):i293-301. doi: 10.1093/bioinformatics/btu266. Bioinformatics. 2014. PMID: 24931996 Free PMC article.
Assembling short reads from jumping libraries with large insert sizes.
Vasilinetc I, Prjibelski AD, Gurevich A, Korobeynikov A, Pevzner PA. Vasilinetc I, et al. Among authors: korobeynikov a. Bioinformatics. 2015 Oct 15;31(20):3262-8. doi: 10.1093/bioinformatics/btv337. Epub 2015 Jun 3. Bioinformatics. 2015. PMID: 26040456
Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria.
Kleigrewe K, Almaliti J, Tian IY, Kinnel RB, Korobeynikov A, Monroe EA, Duggan BM, Di Marzo V, Sherman DH, Dorrestein PC, Gerwick L, Gerwick WH. Kleigrewe K, et al. Among authors: korobeynikov a. J Nat Prod. 2015 Jul 24;78(7):1671-82. doi: 10.1021/acs.jnatprod.5b00301. Epub 2015 Jul 7. J Nat Prod. 2015. PMID: 26149623 Free PMC article.
A Maldiisotopic Approach to Discover Natural Products: Cryptomaldamide, a Hybrid Tripeptide from the Marine Cyanobacterium Moorea producens.
Kinnel RB, Esquenazi E, Leao T, Moss N, Mevers E, Pereira AR, Monroe EA, Korobeynikov A, Murray TF, Sherman D, Gerwick L, Dorrestein PC, Gerwick WH. Kinnel RB, et al. Among authors: korobeynikov a. J Nat Prod. 2017 May 26;80(5):1514-1521. doi: 10.1021/acs.jnatprod.7b00019. Epub 2017 Apr 27. J Nat Prod. 2017. PMID: 28448144 Free PMC article.
45 results