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Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon.
Rougemont Q, Moore JS, Leroy T, Normandeau E, Rondeau EB, Withler RE, Van Doornik DM, Crane PA, Naish KA, Garza JC, Beacham TD, Koop BF, Bernatchez L. Rougemont Q, et al. Among authors: koop bf. PLoS Genet. 2020 Aug 26;16(8):e1008348. doi: 10.1371/journal.pgen.1008348. eCollection 2020 Aug. PLoS Genet. 2020. PMID: 32845885 Free PMC article.
Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene.
Rondeau EB, Messmer AM, Sanderson DS, Jantzen SG, von Schalburg KR, Minkley DR, Leong JS, Macdonald GM, Davidsen AE, Parker WA, Mazzola RS, Campbell B, Koop BF. Rondeau EB, et al. Among authors: koop bf. BMC Genomics. 2013 Jul 6;14:452. doi: 10.1186/1471-2164-14-452. BMC Genomics. 2013. PMID: 23829495 Free PMC article.
The Atlantic salmon genome provides insights into rediploidization.
Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Hu Y, Liberles DA, Vidal R, Iturra P, Jones SJ, Jonassen I, Maass A, Omholt SW, Davidson WS. Lien S, et al. Among authors: koop bf. Nature. 2016 May 12;533(7602):200-5. doi: 10.1038/nature17164. Epub 2016 Apr 18. Nature. 2016. PMID: 27088604 Free PMC article.
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium. Macqueen DJ, et al. Among authors: koop bf. BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8. BMC Genomics. 2017. PMID: 28655320 Free PMC article.
Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon.
Le Luyer J, Laporte M, Beacham TD, Kaukinen KH, Withler RE, Leong JS, Rondeau EB, Koop BF, Bernatchez L. Le Luyer J, et al. Among authors: koop bf. Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):12964-12969. doi: 10.1073/pnas.1711229114. Epub 2017 Nov 21. Proc Natl Acad Sci U S A. 2017. PMID: 29162695 Free PMC article.
217 results