Kolpakov F - Search Results

1

ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.

Boytsov A, Abramov S, Aiusheeva AZ, Kasianova AM, Baulin E, Kuznetsov IA, Aulchenko YS, Kolmykov S, Yevshin I, Kolpakov F, Vorontsov IE, Makeev VJ, Kulakovskiy IV. Boytsov A, et al. Among authors: kolpakov f. Nucleic Acids Res. 2022 Jul 5;50(W1):W51-W56. doi: 10.1093/nar/gkac262. Nucleic Acids Res. 2022. PMID: 35446421 Free PMC article.

2

Transcription Regulatory Regions Database (TRRD):its status in 1999.

Kolchanov NA, Ananko EA, Podkolodnaya OA, Ignatieva EV, Stepanenko IL, Kel-Margoulis OV, Kel AE, Merkulova TI, Goryachkovskaya TN, Busygina TV, Kolpakov FA, Podkolodny NL, Naumochkin AN, Romashchenko AG. Kolchanov NA, et al. Among authors: kolpakov fa. Nucleic Acids Res. 1999 Jan 1;27(1):303-6. doi: 10.1093/nar/27.1.303. Nucleic Acids Res. 1999. PMID: 9847210 Free PMC article.

3

Transcription regulatory regions database (TRRD): its status in 2000.

Kolchanov NA, Podkolodnaya OA, Ananko EA, Ignatieva EV, Stepanenko IL, Kel-Margoulis OV, Kel AE, Merkulova TI, Goryachkovskaya TN, Busygina TV, Kolpakov FA, Podkolodny NL, Naumochkin AN, Korostishevskaya IM, Romashchenko AG, Overton GC. Kolchanov NA, et al. Among authors: kolpakov fa. Nucleic Acids Res. 2000 Jan 1;28(1):298-301. doi: 10.1093/nar/28.1.298. Nucleic Acids Res. 2000. PMID: 10592253 Free PMC article.

4

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.

Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. Kulakovskiy IV, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D116-25. doi: 10.1093/nar/gkv1249. Epub 2015 Nov 19. Nucleic Acids Res. 2016. PMID: 26586801 Free PMC article.

5

GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments.

Yevshin I, Sharipov R, Valeev T, Kel A, Kolpakov F. Yevshin I, et al. Among authors: kolpakov f. Nucleic Acids Res. 2017 Jan 4;45(D1):D61-D67. doi: 10.1093/nar/gkw951. Epub 2016 Oct 24. Nucleic Acids Res. 2017. PMID: 27924024 Free PMC article.

6

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.

Kulakovskiy IV, Vorontsov IE, Yevshin IS, Sharipov RN, Fedorova AD, Rumynskiy EI, Medvedeva YA, Magana-Mora A, Bajic VB, Papatsenko DA, Kolpakov FA, Makeev VJ. Kulakovskiy IV, et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259. doi: 10.1093/nar/gkx1106. Nucleic Acids Res. 2018. PMID: 29140464 Free PMC article.

7

Prediction of protein-DNA interactions of transcription factors linking proteomics and transcriptomics data.

Kondrakhin Y, Valeev T, Sharipov R, Yevshin I, Kolpakov F, Kel A. Kondrakhin Y, et al. Among authors: kolpakov f. EuPA Open Proteom. 2016 Sep 15;13:14-23. doi: 10.1016/j.euprot.2016.09.001. eCollection 2016 Dec. EuPA Open Proteom. 2016. PMID: 29900118 Free PMC article.

8

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.

Vorontsov IE, Fedorova AD, Yevshin IS, Sharipov RN, Kolpakov FA, Makeev VJ, Kulakovskiy IV. Vorontsov IE, et al. BMC Res Notes. 2018 Oct 23;11(1):756. doi: 10.1186/s13104-018-3856-x. BMC Res Notes. 2018. PMID: 30352610 Free PMC article.

9

GTRD: a database on gene transcription regulation-2019 update.

Yevshin I, Sharipov R, Kolmykov S, Kondrakhin Y, Kolpakov F. Yevshin I, et al. Among authors: kolpakov f. Nucleic Acids Res. 2019 Jan 8;47(D1):D100-D105. doi: 10.1093/nar/gky1128. Nucleic Acids Res. 2019. PMID: 30445619 Free PMC article.

10

Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.

Kel A, Boyarskikh U, Stegmaier P, Leskov LS, Sokolov AV, Yevshin I, Mandrik N, Stelmashenko D, Koschmann J, Kel-Margoulis O, Krull M, Martínez-Cardús A, Moran S, Esteller M, Kolpakov F, Filipenko M, Wingender E. Kel A, et al. Among authors: kolpakov f. BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):119. doi: 10.1186/s12859-019-2687-7. BMC Bioinformatics. 2019. PMID: 30999858 Free PMC article.

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