Kolaskar AS - Search Results

1

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.

Greenbaum JA, Andersen PH, Blythe M, Bui HH, Cachau RE, Crowe J, Davies M, Kolaskar AS, Lund O, Morrison S, Mumey B, Ofran Y, Pellequer JL, Pinilla C, Ponomarenko JV, Raghava GP, van Regenmortel MH, Roggen EL, Sette A, Schlessinger A, Sollner J, Zand M, Peters B. Greenbaum JA, et al. Among authors: kolaskar as. J Mol Recognit. 2007 Mar-Apr;20(2):75-82. doi: 10.1002/jmr.815. J Mol Recognit. 2007. PMID: 17205610 Review.

2

CEP: a conformational epitope prediction server.

Kulkarni-Kale U, Bhosle S, Kolaskar AS. Kulkarni-Kale U, et al. Among authors: kolaskar as. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W168-71. doi: 10.1093/nar/gki460. Nucleic Acids Res. 2005. PMID: 15980448 Free PMC article.

3

Antigenic determinants reacting with rheumatoid factor: epitopes with different primary sequences share similar conformation.

Williams RC Jr, Malone CC, Kolaskar AS, Kulkarni-Kale U. Williams RC Jr, et al. Among authors: kolaskar as. Mol Immunol. 1997 May;34(7):543-56. doi: 10.1016/s0161-5890(97)00024-2. Mol Immunol. 1997. PMID: 9364220

4

Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus.

Kolaskar AS, Kulkarni-Kale U. Kolaskar AS, et al. Virology. 1999 Aug 15;261(1):31-42. doi: 10.1006/viro.1999.9859. Virology. 1999. PMID: 10441554 Free article.

5

VirGen: a comprehensive viral genome resource.

Kulkarni-Kale U, Bhosle S, Manjari GS, Kolaskar AS. Kulkarni-Kale U, et al. Among authors: kolaskar as. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D289-92. doi: 10.1093/nar/gkh098. Nucleic Acids Res. 2004. PMID: 14681415 Free PMC article.

6

Curation of viral genomes: challenges, applications and the way forward.

Kulkarni-Kale U, Bhosle SG, Manjari GS, Joshi M, Bansode S, Kolaskar AS. Kulkarni-Kale U, et al. Among authors: kolaskar as. BMC Bioinformatics. 2006 Dec 18;7 Suppl 5(Suppl 5):S12. doi: 10.1186/1471-2105-7-S5-S12. BMC Bioinformatics. 2006. PMID: 17254296 Free PMC article.

7

Sequence alignment approach to pick up conformationally similar protein fragments.

Kolaskar AS, Kulkarni-Kale U. Kolaskar AS, et al. J Mol Biol. 1992 Feb 20;223(4):1053-61. doi: 10.1016/0022-2836(92)90261-h. J Mol Biol. 1992. PMID: 1538389

8

Multiple alignment of sequences on parallel computers.

Date S, Kulkarni R, Kulkarni B, Kulkarni-Kale U, Kolaskar AS. Date S, et al. Among authors: kolaskar as. Comput Appl Biosci. 1993 Aug;9(4):397-402. doi: 10.1093/bioinformatics/9.4.397. Comput Appl Biosci. 1993. PMID: 8402205

9

Determination of primary amino acid sequence and unique three-dimensional structure of WGH1, a monoclonal human IgM antibody with anti-PR3 specificity.

Davis JA, Peen E, Williams RC, Perkins S, Malone CC, McCormack WT, Csernok E, Gross WL, Kolaskar AS, Kulkarni-Kale U. Davis JA, et al. Among authors: kolaskar as. Clin Immunol Immunopathol. 1998 Oct;89(1):35-43. doi: 10.1006/clin.1998.4582. Clin Immunol Immunopathol. 1998. PMID: 9756722

10

Recognition of helper T cell epitopes in envelope (E) glycoprotein of Japanese encephalitis, west Nile and Dengue viruses.

Kutubuddin M, Kolaskar AS, Galande S, Gore MM, Ghosh SN, Banerjee K. Kutubuddin M, et al. Among authors: kolaskar as. Mol Immunol. 1991 Jan-Feb;28(1-2):149-54. doi: 10.1016/0161-5890(91)90098-5. Mol Immunol. 1991. PMID: 1707135

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