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qPortal: A platform for data-driven biomedical research.
Mohr C, Friedrich A, Wojnar D, Kenar E, Polatkan AC, Codrea MC, Czemmel S, Kohlbacher O, Nahnsen S. Mohr C, et al. Among authors: kohlbacher o. PLoS One. 2018 Jan 19;13(1):e0191603. doi: 10.1371/journal.pone.0191603. eCollection 2018. PLoS One. 2018. PMID: 29352322 Free PMC article.
In silico design of targeted SRM-based experiments.
Nahnsen S, Kohlbacher O. Nahnsen S, et al. Among authors: kohlbacher o. BMC Bioinformatics. 2012;13 Suppl 16(Suppl 16):S8. doi: 10.1186/1471-2105-13-S16-S8. Epub 2012 Nov 5. BMC Bioinformatics. 2012. PMID: 23176520 Free PMC article.
Tools for label-free peptide quantification.
Nahnsen S, Bielow C, Reinert K, Kohlbacher O. Nahnsen S, et al. Among authors: kohlbacher o. Mol Cell Proteomics. 2013 Mar;12(3):549-56. doi: 10.1074/mcp.R112.025163. Epub 2012 Dec 17. Mol Cell Proteomics. 2013. PMID: 23250051 Free PMC article. Review.
An automated pipeline for high-throughput label-free quantitative proteomics.
Weisser H, Nahnsen S, Grossmann J, Nilse L, Quandt A, Brauer H, Sturm M, Kenar E, Kohlbacher O, Aebersold R, Malmström L. Weisser H, et al. Among authors: kohlbacher o. J Proteome Res. 2013 Apr 5;12(4):1628-44. doi: 10.1021/pr300992u. Epub 2013 Feb 22. J Proteome Res. 2013. PMID: 23391308
BiNA: a visual analytics tool for biological network data.
Gerasch A, Faber D, Küntzer J, Niermann P, Kohlbacher O, Lenhof HP, Kaufmann M. Gerasch A, et al. Among authors: kohlbacher o. PLoS One. 2014 Feb 13;9(2):e87397. doi: 10.1371/journal.pone.0087397. eCollection 2014. PLoS One. 2014. PMID: 24551056 Free PMC article.
qcML: an exchange format for quality control metrics from mass spectrometry experiments.
Walzer M, Pernas LE, Nasso S, Bittremieux W, Nahnsen S, Kelchtermans P, Pichler P, van den Toorn HW, Staes A, Vandenbussche J, Mazanek M, Taus T, Scheltema RA, Kelstrup CD, Gatto L, van Breukelen B, Aiche S, Valkenborg D, Laukens K, Lilley KS, Olsen JV, Heck AJ, Mechtler K, Aebersold R, Gevaert K, Vizcaíno JA, Hermjakob H, Kohlbacher O, Martens L. Walzer M, et al. Among authors: kohlbacher o. Mol Cell Proteomics. 2014 Aug;13(8):1905-13. doi: 10.1074/mcp.M113.035907. Epub 2014 Apr 23. Mol Cell Proteomics. 2014. PMID: 24760958 Free PMC article.
253 results