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Whole-genome analysis of giraffe supports four distinct species.
Coimbra RTF, Winter S, Kumar V, Koepfli KP, Gooley RM, Dobrynin P, Fennessy J, Janke A. Coimbra RTF, et al. Among authors: koepfli kp. Curr Biol. 2021 Jul 12;31(13):2929-2938.e5. doi: 10.1016/j.cub.2021.04.033. Epub 2021 May 5. Curr Biol. 2021. PMID: 33957077 Free article.
Relating enhancer genetic variation across mammals to complex phenotypes using machine learning.
Kaplow IM, Lawler AJ, Schäffer DE, Srinivasan C, Sestili HH, Wirthlin ME, Phan BN, Prasad K, Brown AR, Zhang X, Foley K, Genereux DP; Zoonomia Consortium**; Karlsson EK, Lindblad-Toh K, Meyer WK, Pfenning AR. Kaplow IM, et al. Science. 2023 Apr 28;380(6643):eabm7993. doi: 10.1126/science.abm7993. Epub 2023 Apr 28. Science. 2023. PMID: 37104615 Free PMC article.
Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species.
Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK. Koepfli KP, et al. Curr Biol. 2015 Aug 17;25(16):2158-65. doi: 10.1016/j.cub.2015.06.060. Epub 2015 Jul 30. Curr Biol. 2015. PMID: 26234211 Free article.
Genomic legacy of the African cheetah, Acinonyx jubatus.
Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ. Dobrynin P, et al. Among authors: koepfli kp. Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4. Genome Biol. 2015. PMID: 26653294 Free PMC article.
Response to Comment by Faurby, Werdelin and Svenning.
O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P. O'Brien SJ, et al. Among authors: koepfli kp. Genome Biol. 2016 May 5;17:90. doi: 10.1186/s13059-016-0942-z. Genome Biol. 2016. PMID: 27150130 Free PMC article. No abstract available.
Pangolin genomes and the evolution of mammalian scales and immunity.
Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo SJ, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ. Choo SW, et al. Among authors: koepfli kp. Genome Res. 2016 Oct;26(10):1312-1322. doi: 10.1101/gr.203521.115. Epub 2016 Aug 10. Genome Res. 2016. PMID: 27510566 Free PMC article.
Robust forensic matching of confiscated horns to individual poached African rhinoceros.
Harper C, Ludwig A, Clarke A, Makgopela K, Yurchenko A, Guthrie A, Dobrynin P, Tamazian G, Emslie R, van Heerden M, Hofmeyr M, Potter R, Roets J, Beytell P, Otiende M, Kariuki L, du Toit R, Anderson N, Okori J, Antonik A, Koepfli KP, Thompson P, O'Brien SJ. Harper C, et al. Among authors: koepfli kp. Curr Biol. 2018 Jan 8;28(1):R13-R14. doi: 10.1016/j.cub.2017.11.005. Curr Biol. 2018. PMID: 29316411 Free article.
Interspecific Gene Flow Shaped the Evolution of the Genus Canis.
Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, Fernandes C, Gaubert P, Koepfli KP, Budd J, Rueness EK, Sillero C, Heide-Jørgensen MP, Petersen B, Sicheritz-Ponten T, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP. Gopalakrishnan S, et al. Among authors: koepfli kp. Curr Biol. 2018 Nov 5;28(21):3441-3449.e5. doi: 10.1016/j.cub.2018.08.041. Epub 2018 Oct 18. Curr Biol. 2018. PMID: 30344120 Free PMC article.
102 results