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Introducing the Lipidomics Minimal Reporting Checklist.
McDonald JG, Ejsing CS, Kopczynski D, Holčapek M, Aoki J, Arita M, Arita M, Baker ES, Bertrand-Michel J, Bowden JA, Brügger B, Ellis SR, Fedorova M, Griffiths WJ, Han X, Hartler J, Hoffmann N, Koelmel JP, Köfeler HC, Mitchell TW, O'Donnell VB, Saigusa D, Schwudke D, Shevchenko A, Ulmer CZ, Wenk MR, Witting M, Wolrab D, Xia Y, Ahrends R, Liebisch G, Ekroos K. McDonald JG, et al. Among authors: koelmel jp. Nat Metab. 2022 Sep;4(9):1086-1088. doi: 10.1038/s42255-022-00628-3. Nat Metab. 2022. PMID: 35934691 No abstract available.
Quality control requirements for the correct annotation of lipidomics data.
Köfeler HC, Eichmann TO, Ahrends R, Bowden JA, Danne-Rasche N, Dennis EA, Fedorova M, Griffiths WJ, Han X, Hartler J, Holčapek M, Jirásko R, Koelmel JP, Ejsing CS, Liebisch G, Ni Z, O'Donnell VB, Quehenberger O, Schwudke D, Shevchenko A, Wakelam MJO, Wenk MR, Wolrab D, Ekroos K. Köfeler HC, et al. Among authors: koelmel jp. Nat Commun. 2021 Aug 6;12(1):4771. doi: 10.1038/s41467-021-24984-y. Nat Commun. 2021. PMID: 34362906 Free PMC article. No abstract available.
A Novel Technique for Redox Lipidomics Using Mass Spectrometry: Application on Vegetable Oils Used to Fry Potatoes.
Koelmel JP, Aristizabal-Henao JJ, Ni Z, Fedorova M, Kato S, Otoki Y, Nakagawa K, Lin EZ, Godri Pollitt KJ, Vasiliou V, Guingab JD, Garrett TJ, Williams TL, Bowden JA, Penumetcha M. Koelmel JP, et al. J Am Soc Mass Spectrom. 2021 Jul 7;32(7):1798-1809. doi: 10.1021/jasms.1c00150. Epub 2021 Jun 7. J Am Soc Mass Spectrom. 2021. PMID: 34096708
A lipidome atlas in MS-DIAL 4.
Tsugawa H, Ikeda K, Takahashi M, Satoh A, Mori Y, Uchino H, Okahashi N, Yamada Y, Tada I, Bonini P, Higashi Y, Okazaki Y, Zhou Z, Zhu ZJ, Koelmel J, Cajka T, Fiehn O, Saito K, Arita M, Arita M. Tsugawa H, et al. Nat Biotechnol. 2020 Oct;38(10):1159-1163. doi: 10.1038/s41587-020-0531-2. Epub 2020 Jun 15. Nat Biotechnol. 2020. PMID: 32541957
Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation.
Koelmel JP, Ulmer CZ, Jones CM, Yost RA, Bowden JA. Koelmel JP, et al. Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Aug;1862(8):766-770. doi: 10.1016/j.bbalip.2017.02.016. Epub 2017 Mar 2. Biochim Biophys Acta Mol Cell Biol Lipids. 2017. PMID: 28263877 Free PMC article. Review. No abstract available.
57 results