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Whole-Genome Sequencing of 84 Japanese Eels Reveals Evidence against Panmixia and Support for Sympatric Speciation.
Igarashi Y, Zhang H, Tan E, Sekino M, Yoshitake K, Kinoshita S, Mitsuyama S, Yoshinaga T, Chow S, Kurogi H, Shinoda A, Han YS, Wakiya R, Mochioka N, Yamamoto T, Kuwada H, Kaji Y, Suzuki Y, Gojobori T, Kobayashi T, Saitoh K, Watabe S, Asakawa S. Igarashi Y, et al. Among authors: kobayashi t. Genes (Basel). 2018 Sep 28;9(10):474. doi: 10.3390/genes9100474. Genes (Basel). 2018. PMID: 30274234 Free PMC article.
Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna.
Nakamura Y, Mori K, Saitoh K, Oshima K, Mekuchi M, Sugaya T, Shigenobu Y, Ojima N, Muta S, Fujiwara A, Yasuike M, Oohara I, Hirakawa H, Chowdhury VS, Kobayashi T, Nakajima K, Sano M, Wada T, Tashiro K, Ikeo K, Hattori M, Kuhara S, Gojobori T, Inouye K. Nakamura Y, et al. Among authors: kobayashi t. Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11061-6. doi: 10.1073/pnas.1302051110. Epub 2013 Jun 18. Proc Natl Acad Sci U S A. 2013. PMID: 23781100 Free PMC article.
V-GAP: Viral genome assembly pipeline.
Nakamura Y, Yasuike M, Nishiki I, Iwasaki Y, Fujiwara A, Kawato Y, Nakai T, Nagai S, Kobayashi T, Gojobori T, Ototake M. Nakamura Y, et al. Among authors: kobayashi t. Gene. 2016 Feb 1;576(2 Pt 1):676-80. doi: 10.1016/j.gene.2015.10.029. Epub 2015 Oct 22. Gene. 2016. PMID: 26475935 Free article.
A Preliminary Metagenome Analysis Based on a Combination of Protein Domains.
Igarashi Y, Mori D, Mitsuyama S, Yoshitake K, Ono H, Watanabe T, Taniuchi Y, Sakami T, Kuwata A, Kobayashi T, Ishino Y, Watabe S, Gojobori T, Asakawa S. Igarashi Y, et al. Among authors: kobayashi t. Proteomes. 2019 Apr 29;7(2):19. doi: 10.3390/proteomes7020019. Proteomes. 2019. PMID: 31035705 Free PMC article.
Estimation of tuna population by the improved analytical pipeline of unique molecular identifier-assisted HaCeD-Seq (haplotype count from eDNA).
Yoshitake K, Fujiwara A, Matsuura A, Sekino M, Yasuike M, Nakamura Y, Nakamichi R, Kodama M, Takahama Y, Takasuka A, Asakawa S, Nishikiori K, Kobayashi T, Watabe S. Yoshitake K, et al. Among authors: kobayashi t. Sci Rep. 2021 Apr 12;11(1):7031. doi: 10.1038/s41598-021-86190-6. Sci Rep. 2021. PMID: 33846364 Free PMC article.
Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan.
Yoshitake K, Kimura G, Sakami T, Watanabe T, Taniuchi Y, Kakehi S, Kuwata A, Yamaguchi H, Kataoka T, Kawachi M, Ikeo K, Tan E, Igarashi Y, Ohtsubo M, Watabe S, Suzuki Y, Asakawa S, Ishino S, Tashiro K, Ishino Y, Kobayashi T, Mineta K, Gojobori T. Yoshitake K, et al. Among authors: kobayashi t. Sci Rep. 2021 Jun 9;11(1):12222. doi: 10.1038/s41598-021-91615-3. Sci Rep. 2021. PMID: 34108585 Free PMC article.
Metagenomic analysis provides functional insights into seasonal change of a non-cyanobacterial prokaryotic community in temperate coastal waters.
Matsumoto K, Sakami T, Watanabe T, Taniuchi Y, Kuwata A, Kakehi S, Engkong T, Igarashi Y, Kinoshita S, Asakawa S, Hattori M, Watabe S, Ishino Y, Kobayashi T, Gojobori T, Ikeo K. Matsumoto K, et al. Among authors: kobayashi t. PLoS One. 2021 Oct 12;16(10):e0257862. doi: 10.1371/journal.pone.0257862. eCollection 2021. PLoS One. 2021. PMID: 34637433 Free PMC article.
The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis).
Nakamura Y, Sasaki N, Kobayashi M, Ojima N, Yasuike M, Shigenobu Y, Satomi M, Fukuma Y, Shiwaku K, Tsujimoto A, Kobayashi T, Nakayama I, Ito F, Nakajima K, Sano M, Wada T, Kuhara S, Inouye K, Gojobori T, Ikeo K. Nakamura Y, et al. Among authors: kobayashi m, kobayashi t. PLoS One. 2013;8(3):e57122. doi: 10.1371/journal.pone.0057122. Epub 2013 Mar 11. PLoS One. 2013. PMID: 23536760 Free PMC article.
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