Kobayashi N - Search Results

1

Design of complicated all-α protein structures.

Sakuma K, Kobayashi N, Sugiki T, Nagashima T, Fujiwara T, Suzuki K, Kobayashi N, Murata T, Kosugi T, Tatsumi-Koga R, Koga N. Sakuma K, et al. Among authors: kobayashi n. Nat Struct Mol Biol. 2024 Feb;31(2):275-282. doi: 10.1038/s41594-023-01147-9. Epub 2024 Jan 4. Nat Struct Mol Biol. 2024. PMID: 38177681

2

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database.

Kobayashi N, Harano Y, Tochio N, Nakatani E, Kigawa T, Yokoyama S, Mading S, Ulrich EL, Markley JL, Akutsu H, Fujiwara T. Kobayashi N, et al. J Biomol NMR. 2012 Aug;53(4):311-20. doi: 10.1007/s10858-012-9641-6. Epub 2012 Jun 13. J Biomol NMR. 2012. PMID: 22689068 Free PMC article.

3

(1)H, (15)N and (13)C resonance assignments of the conserved region in the middle domain of S. pombe Sin1 protein.

Kataoka S, Furuita K, Hattori Y, Kobayashi N, Ikegami T, Shiozaki K, Fujiwara T, Kojima C. Kataoka S, et al. Among authors: kobayashi n. Biomol NMR Assign. 2015 Apr;9(1):89-92. doi: 10.1007/s12104-014-9550-6. Epub 2014 Mar 8. Biomol NMR Assign. 2015. PMID: 24610629

4

Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints.

Furuita K, Kataoka S, Sugiki T, Hattori Y, Kobayashi N, Ikegami T, Shiozaki K, Fujiwara T, Kojima C. Furuita K, et al. Among authors: kobayashi n. J Biomol NMR. 2015 Jan;61(1):55-64. doi: 10.1007/s10858-014-9882-7. Epub 2014 Nov 27. J Biomol NMR. 2015. PMID: 25428765

5

Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists.

Sugiki T, Kobayashi N, Fujiwara T. Sugiki T, et al. Among authors: kobayashi n. Comput Struct Biotechnol J. 2017 Apr 13;15:328-339. doi: 10.1016/j.csbj.2017.04.001. eCollection 2017. Comput Struct Biotechnol J. 2017. PMID: 28487762 Free PMC article. Review.

6

Noise peak filtering in multi-dimensional NMR spectra using convolutional neural networks.

Kobayashi N, Hattori Y, Nagata T, Shinya S, Güntert P, Kojima C, Fujiwara T. Kobayashi N, et al. Bioinformatics. 2018 Dec 15;34(24):4300-4301. doi: 10.1093/bioinformatics/bty581. Bioinformatics. 2018. PMID: 29985974

7

BioMagResBank (BMRB) as a Resource for Structural Biology.

Romero PR, Kobayashi N, Wedell JR, Baskaran K, Iwata T, Yokochi M, Maziuk D, Yao H, Fujiwara T, Kurusu G, Ulrich EL, Hoch JC, Markley JL. Romero PR, et al. Among authors: kobayashi n. Methods Mol Biol. 2020;2112:187-218. doi: 10.1007/978-1-0716-0270-6_14. Methods Mol Biol. 2020. PMID: 32006287 Free PMC article.

8

Robust folding of a de novo designed ideal protein even with most of the core mutated to valine.

Koga R, Yamamoto M, Kosugi T, Kobayashi N, Sugiki T, Fujiwara T, Koga N. Koga R, et al. Among authors: kobayashi n. Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31149-31156. doi: 10.1073/pnas.2002120117. Epub 2020 Nov 23. Proc Natl Acad Sci U S A. 2020. PMID: 33229587 Free PMC article.

9

¹H, ¹³C, and ¹⁵N resonance assignments of human glutathione peroxidase 4.

Furuita K, Inomata K, Sugiki T, Kobayashi N, Fujiwara T, Kojima C. Furuita K, et al. Among authors: kobayashi n. Biomol NMR Assign. 2022 Oct;16(2):267-271. doi: 10.1007/s12104-022-10090-7. Epub 2022 May 26. Biomol NMR Assign. 2022. PMID: 35616778

10

Exploration of novel αβ-protein folds through de novo design.

Minami S, Kobayashi N, Sugiki T, Nagashima T, Fujiwara T, Tatsumi-Koga R, Chikenji G, Koga N. Minami S, et al. Among authors: kobayashi n. Nat Struct Mol Biol. 2023 Aug;30(8):1132-1140. doi: 10.1038/s41594-023-01029-0. Epub 2023 Jul 3. Nat Struct Mol Biol. 2023. PMID: 37400653 Free PMC article.

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