Ko KD - Search Results

1

PHYRN: a robust method for phylogenetic analysis of highly divergent sequences.

Bhardwaj G, Ko KD, Hong Y, Zhang Z, Ho NL, Chintapalli SV, Kline LA, Gotlin M, Hartranft DN, Patterson ME, Dave F, Smith EJ, Holmes EC, Patterson RL, van Rossum DB. Bhardwaj G, et al. Among authors: ko kd. PLoS One. 2012;7(4):e34261. doi: 10.1371/journal.pone.0034261. Epub 2012 Apr 13. PLoS One. 2012. PMID: 22514627 Free PMC article.

2

Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity.

Chang GS, Hong Y, Ko KD, Bhardwaj G, Holmes EC, Patterson RL, van Rossum DB. Chang GS, et al. Among authors: ko kd. Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13474-9. doi: 10.1073/pnas.0803860105. Epub 2008 Sep 2. Proc Natl Acad Sci U S A. 2008. PMID: 18765810 Free PMC article.

3

Predicting protein folds with fold-specific PSSM libraries.

Hong Y, Chintapalli SV, Ko KD, Bhardwaj G, Zhang Z, van Rossum D, Patterson RL. Hong Y, et al. Among authors: ko kd. PLoS One. 2011;6(6):e20557. doi: 10.1371/journal.pone.0020557. Epub 2011 Jun 16. PLoS One. 2011. PMID: 21698189 Free PMC article.

4

Phylogenetic profiles reveal structural/functional determinants of TRPC3 signal-sensing antennae.

Ko KD, Bhardwaj G, Hong Y, Chang GS, Kiselyov K, van Rossum DB, Patterson RL. Ko KD, et al. Commun Integr Biol. 2009;2(2):133-7. doi: 10.4161/cib.7746. Commun Integr Biol. 2009. PMID: 19704910 Free PMC article.

5

Phylogenetic Profiles Reveal Structural and Functional Determinants of Lipid-binding.

Hong Y, Chalkia D, Ko KD, Bhardwaj G, Chang GS, van Rossum DB, Patterson RL. Hong Y, et al. Among authors: ko kd. J Proteomics Bioinform. 2009 Mar 21;2:139-149. doi: 10.4172/jpb.1000071. J Proteomics Bioinform. 2009. PMID: 19946567 Free PMC article.

6

Psat1-generated α-ketoglutarate and glutamine promote muscle stem cell activation and regeneration.

Ciuffoli V, Feng X, Jiang K, Acevedo-Luna N, Ko KD, Wang AHJ, Riparini G, Khateb M, Glancy B, Dell'Orso S, Sartorelli V. Ciuffoli V, et al. Among authors: ko kd. Genes Dev. 2024 Mar 22;38(3-4):151-167. doi: 10.1101/gad.351428.123. Genes Dev. 2024. PMID: 38453480

7

A deep learning adversarial autoencoder with dynamic batching displays high performance in denoising and ordering scRNA-seq data.

Ko KD, Sartorelli V. Ko KD, et al. iScience. 2024 Jan 30;27(3):109027. doi: 10.1016/j.isci.2024.109027. eCollection 2024 Mar 15. iScience. 2024. PMID: 38361616 Free PMC article.

8

Integrating single-cell transcriptomes, chromatin accessibility, and multiomics analysis of mesoderm-induced embryonic stem cells.

Ko KD, Jiang K, Dell'Orso S, Sartorelli V. Ko KD, et al. STAR Protoc. 2023 May 15;4(2):102307. doi: 10.1016/j.xpro.2023.102307. Online ahead of print. STAR Protoc. 2023. PMID: 37192048 Free PMC article.

9

Polycomb Ezh1 maintains murine muscle stem cell quiescence through non-canonical regulation of Notch signaling.

Feng X, Wang AH, Juan AH, Ko KD, Jiang K, Riparini G, Ciuffoli V, Kaba A, Lopez C, Naz F, Jarnik M, Aliberti E, Hu S, Segalés J, Khateb M, Acevedo-Luna N, Randazzo D, Cheung TH, Muñoz-Cánoves P, Dell'Orso S, Sartorelli V. Feng X, et al. Among authors: ko kd. Dev Cell. 2023 Jun 19;58(12):1052-1070.e10. doi: 10.1016/j.devcel.2023.04.005. Epub 2023 Apr 26. Dev Cell. 2023. PMID: 37105173

10

Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution.

Khateb M, Perovanovic J, Ko KD, Jiang K, Feng X, Acevedo-Luna N, Chal J, Ciuffoli V, Genzor P, Simone J, Haase AD, Pourquié O, Dell'Orso S, Sartorelli V. Khateb M, et al. Among authors: ko kd. Cell Rep. 2022 Aug 16;40(7):111219. doi: 10.1016/j.celrep.2022.111219. Cell Rep. 2022. PMID: 35977485 Free PMC article.

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