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3,331 results

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Robustness of cancer microbiome signals over a broad range of methodological variation.
Sepich-Poore GD, McDonald D, Kopylova E, Guccione C, Zhu Q, Austin G, Carpenter C, Fraraccio S, Wandro S, Kosciolek T, Janssen S, Metcalf JL, Song SJ, Kanbar J, Miller-Montgomery S, Heaton R, Mckay R, Patel SP, Swafford AD, Korem T, Knight R. Sepich-Poore GD, et al. Among authors: knight r. Oncogene. 2024 Apr;43(15):1127-1148. doi: 10.1038/s41388-024-02974-w. Epub 2024 Feb 23. Oncogene. 2024. PMID: 38396294 Free PMC article.
Boulder ALignment Editor (ALE): a web-based RNA alignment tool.
Stombaugh J, Widmann J, McDonald D, Knight R. Stombaugh J, et al. Among authors: knight r. Bioinformatics. 2011 Jun 15;27(12):1706-7. doi: 10.1093/bioinformatics/btr258. Epub 2011 May 5. Bioinformatics. 2011. PMID: 21546392 Free PMC article.
Our microbial selves: what ecology can teach us.
Gonzalez A, Clemente JC, Shade A, Metcalf JL, Song S, Prithiviraj B, Palmer BE, Knight R. Gonzalez A, et al. Among authors: knight r. EMBO Rep. 2011 Jul 1;12(8):775-84. doi: 10.1038/embor.2011.137. EMBO Rep. 2011. PMID: 21720391 Free PMC article. Review.
Characterizing microbial communities through space and time.
Gonzalez A, King A, Robeson MS 2nd, Song S, Shade A, Metcalf JL, Knight R. Gonzalez A, et al. Among authors: knight r. Curr Opin Biotechnol. 2012 Jun;23(3):431-6. doi: 10.1016/j.copbio.2011.11.017. Epub 2011 Dec 7. Curr Opin Biotechnol. 2012. PMID: 22154467 Free PMC article. Review.
Defining the human microbiome.
Ursell LK, Metcalf JL, Parfrey LW, Knight R. Ursell LK, et al. Among authors: knight r. Nutr Rev. 2012 Aug;70 Suppl 1(Suppl 1):S38-44. doi: 10.1111/j.1753-4887.2012.00493.x. Nutr Rev. 2012. PMID: 22861806 Free PMC article. Review.
From molecules to dynamic biological communities.
McDonald D, Vázquez-Baeza Y, Walters WA, Caporaso JG, Knight R. McDonald D, et al. Among authors: knight r. Biol Philos. 2013 Mar;28(2):241-259. doi: 10.1007/s10539-013-9364-4. Epub 2013 Feb 5. Biol Philos. 2013. PMID: 23483075 Free PMC article.
Replenishing our defensive microbes.
Ursell LK, Van Treuren W, Metcalf JL, Pirrung M, Gewirtz A, Knight R. Ursell LK, et al. Among authors: knight r. Bioessays. 2013 Sep;35(9):810-7. doi: 10.1002/bies.201300018. Epub 2013 Jul 8. Bioessays. 2013. PMID: 23836415 Free PMC article. Review.
Advancing our understanding of the human microbiome using QIIME.
Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R. Navas-Molina JA, et al. Among authors: knight r. Methods Enzymol. 2013;531:371-444. doi: 10.1016/B978-0-12-407863-5.00019-8. Methods Enzymol. 2013. PMID: 24060131 Free PMC article.
3,331 results