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A community-developed open-source computational ecosystem for big neuro data.
Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. Vogelstein JT, et al. Among authors: kleissas dm. Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. Nat Methods. 2018. PMID: 30377345 Free PMC article. No abstract available.
An automated images-to-graphs framework for high resolution connectomics.
Gray Roncal WR, Kleissas DM, Vogelstein JT, Manavalan P, Lillaney K, Pekala M, Burns R, Vogelstein RJ, Priebe CE, Chevillet MA, Hager GD. Gray Roncal WR, et al. Among authors: kleissas dm. Front Neuroinform. 2015 Aug 13;9:20. doi: 10.3389/fninf.2015.00020. eCollection 2015. Front Neuroinform. 2015. PMID: 26321942 Free PMC article.
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.
Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, Reid RC, Smith SJ, Szalay AS, Vogelstein JT, Vogelstein RJ. Burns R, et al. Sci Stat Database Manag. 2013:10.1145/2484838.2484870. doi: 10.1145/2484838.2484870. Sci Stat Database Manag. 2013. PMID: 24401992 Free PMC article.
Science in the cloud (SIC): A use case in MRI connectomics.
Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, Poldrack RA, Wiener M, Vogelstein RJ, Burns R, Vogelstein JT. Kiar G, et al. Gigascience. 2017 May 1;6(5):1-10. doi: 10.1093/gigascience/gix013. Gigascience. 2017. PMID: 28327935 Free PMC article.
To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery.
Neuro Cloud Consortium. Electronic address: jovo@jhu.edu; Neuro Cloud Consortium. Neuro Cloud Consortium. Electronic address: jovo@jhu.edu, et al. Neuron. 2016 Nov 2;92(3):622-627. doi: 10.1016/j.neuron.2016.10.033. Neuron. 2016. PMID: 27810005 Free PMC article.
Bioimage Informatics for Big Data.
Peng H, Zhou J, Zhou Z, Bria A, Li Y, Kleissas DM, Drenkow NG, Long B, Liu X, Chen H. Peng H, et al. Among authors: kleissas dm. Adv Anat Embryol Cell Biol. 2016;219:263-72. doi: 10.1007/978-3-319-28549-8_10. Adv Anat Embryol Cell Biol. 2016. PMID: 27207370 Review.
Embedded clutter reduction and face detection algorithms for a visual prosthesis.
Rollend DM, Rosendall PE, Wolfe KC, Kleissas DM, Billings SD, Oben JM, Helder JB, Tenore FV, Burlina PM, Roy A, Greenberg R, Katyal KD. Rollend DM, et al. Among authors: kleissas dm. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug;2016:411-414. doi: 10.1109/EMBC.2016.7590727. Annu Int Conf IEEE Eng Med Biol Soc. 2016. PMID: 28268360