Kladde MP - Search Results

1

Human lymphoid translocation fragile zones are hypomethylated and have accessible chromatin.

Lu Z, Lieber MR, Tsai AG, Pardo CE, Müschen M, Kladde MP, Hsieh CL. Lu Z, et al. Among authors: kladde mp. Mol Cell Biol. 2015 Apr;35(7):1209-22. doi: 10.1128/MCB.01085-14. Epub 2015 Jan 26. Mol Cell Biol. 2015. PMID: 25624348 Free PMC article.

2

Gal4p-mediated chromatin remodeling depends on binding site position in nucleosomes but does not require DNA replication.

Xu M, Simpson RT, Kladde MP. Xu M, et al. Among authors: kladde mp. Mol Cell Biol. 1998 Mar;18(3):1201-12. doi: 10.1128/MCB.18.3.1201. Mol Cell Biol. 1998. PMID: 9488435 Free PMC article.

3

Single-molecule analysis of chromatin: changing the view of genomes one molecule at a time.

Pondugula S, Kladde MP. Pondugula S, et al. Among authors: kladde mp. J Cell Biochem. 2008 Oct 1;105(2):330-7. doi: 10.1002/jcb.21849. J Cell Biochem. 2008. PMID: 18615586 Free PMC article. Review.

4

DNA methyltransferase probing of chromatin structure within populations and on single molecules.

Pardo C, Hoose SA, Pondugula S, Kladde MP. Pardo C, et al. Among authors: kladde mp. Methods Mol Biol. 2009;523:41-65. doi: 10.1007/978-1-59745-190-1_4. Methods Mol Biol. 2009. PMID: 19381922

5

Coupling phosphate homeostasis to cell cycle-specific transcription: mitotic activation of Saccharomyces cerevisiae PHO5 by Mcm1 and Forkhead proteins.

Pondugula S, Neef DW, Voth WP, Darst RP, Dhasarathy A, Reynolds MM, Takahata S, Stillman DJ, Kladde MP. Pondugula S, et al. Among authors: kladde mp. Mol Cell Biol. 2009 Sep;29(18):4891-905. doi: 10.1128/MCB.00222-09. Epub 2009 Jul 13. Mol Cell Biol. 2009. PMID: 19596791 Free PMC article.

6

Bisulfite sequencing of DNA.

Darst RP, Pardo CE, Ai L, Brown KD, Kladde MP. Darst RP, et al. Among authors: kladde mp. Curr Protoc Mol Biol. 2010 Jul;Chapter 7:Unit 7.9.1-17. doi: 10.1002/0471142727.mb0709s91. Curr Protoc Mol Biol. 2010. PMID: 20583099 Free PMC article.

7

MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects.

Pardo CE, Carr IM, Hoffman CJ, Darst RP, Markham AF, Bonthron DT, Kladde MP. Pardo CE, et al. Among authors: kladde mp. Nucleic Acids Res. 2011 Jan;39(1):e5. doi: 10.1093/nar/gkq716. Epub 2010 Oct 19. Nucleic Acids Res. 2011. PMID: 20959287 Free PMC article.

8

Simultaneous single-molecule mapping of protein-DNA interactions and DNA methylation by MAPit.

Pardo CE, Darst RP, Nabilsi NH, Delmas AL, Kladde MP. Pardo CE, et al. Among authors: kladde mp. Curr Protoc Mol Biol. 2011 Jul;Chapter 21:Unit 21.22. doi: 10.1002/0471142727.mb2122s95. Curr Protoc Mol Biol. 2011. PMID: 21732317 Free PMC article.

9

WIF1 is a frequent target for epigenetic silencing in squamous cell carcinoma of the cervix.

Delmas AL, Riggs BM, Pardo CE, Dyer LM, Darst RP, Izumchenko EG, Monroe M, Hakam A, Kladde MP, Siegel EM, Brown KD. Delmas AL, et al. Among authors: kladde mp. Carcinogenesis. 2011 Nov;32(11):1625-33. doi: 10.1093/carcin/bgr193. Epub 2011 Aug 26. Carcinogenesis. 2011. PMID: 21873353 Free PMC article.

10

Restraint of angiogenesis by zinc finger transcription factor CTCF-dependent chromatin insulation.

Tang M, Chen B, Lin T, Li Z, Pardo C, Pampo C, Chen J, Lien CL, Wu L, Ai L, Wang H, Yao K, Oh SP, Seto E, Smith LE, Siemann DW, Kladde MP, Cepko CL, Lu J. Tang M, et al. Among authors: kladde mp. Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15231-6. doi: 10.1073/pnas.1104662108. Epub 2011 Sep 6. Proc Natl Acad Sci U S A. 2011. PMID: 21896759 Free PMC article.

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