King JR - Search Results

1

A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture.

Haus S, Jabbari S, Millat T, Janssen H, Fischer RJ, Bahl H, King JR, Wolkenhauer O. Haus S, et al. Among authors: king jr. BMC Syst Biol. 2011 Jan 19;5:10. doi: 10.1186/1752-0509-5-10. BMC Syst Biol. 2011. PMID: 21247470 Free PMC article.

2

pH-induced gene regulation of solvent production by Clostridium acetobutylicum in continuous culture: parameter estimation and sporulation modelling.

Thorn GJ, King JR, Jabbari S. Thorn GJ, et al. Among authors: king jr. Math Biosci. 2013 Feb;241(2):149-66. doi: 10.1016/j.mbs.2012.11.004. Epub 2012 Nov 28. Math Biosci. 2013. PMID: 23201580 Free PMC article.

3

A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures.

Millat T, Janssen H, Thorn GJ, King JR, Bahl H, Fischer RJ, Wolkenhauer O. Millat T, et al. Among authors: king jr. Appl Microbiol Biotechnol. 2013 Jul;97(14):6451-66. doi: 10.1007/s00253-013-4860-7. Epub 2013 May 3. Appl Microbiol Biotechnol. 2013. PMID: 23640360

4

The putative influence of the agr operon upon survival mechanisms used by Clostridium acetobutylicum.

Jabbari S, Steiner E, Heap JT, Winzer K, Minton NP, King JR. Jabbari S, et al. Among authors: king jr. Math Biosci. 2013 Jun;243(2):223-39. doi: 10.1016/j.mbs.2013.03.005. Epub 2013 Mar 26. Math Biosci. 2013. PMID: 23538287

5

Mathematical modelling of the sporulation-initiation network in Bacillus subtilis revealing the dual role of the putative quorum-sensing signal molecule PhrA.

Jabbari S, Heap JT, King JR. Jabbari S, et al. Among authors: king jr. Bull Math Biol. 2011 Jan;73(1):181-211. doi: 10.1007/s11538-010-9530-7. Epub 2010 Mar 18. Bull Math Biol. 2011. PMID: 20238180

6

Gsmodutils: a python based framework for test-driven genome scale metabolic model development.

Gilbert J, Pearcy N, Norman R, Millat T, Winzer K, King J, Hodgman C, Minton N, Twycross J. Gilbert J, et al. Bioinformatics. 2019 Sep 15;35(18):3397-3403. doi: 10.1093/bioinformatics/btz088. Bioinformatics. 2019. PMID: 30759197 Free PMC article.

7

Mathematical modelling reveals properties of TcdC required for it to be a negative regulator of toxin production in Clostridium difficile.

Jabbari S, Cartman ST, King JR. Jabbari S, et al. Among authors: king jr. J Math Biol. 2015 Mar;70(4):773-804. doi: 10.1007/s00285-014-0780-0. Epub 2014 Apr 1. J Math Biol. 2015. PMID: 24687436 Free PMC article.

8

A mathematical investigation of the effects of inhibitor therapy on three putative phosphorylation cascades governing the two-component system of the agr operon.

Jabbari S, King JR, Williams P. Jabbari S, et al. Among authors: king jr. Math Biosci. 2010 Jun;225(2):115-31. doi: 10.1016/j.mbs.2010.03.001. Epub 2010 Mar 7. Math Biosci. 2010. PMID: 20214910 Free article.

9

Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth conditions.

Tomi-Andrino C, Norman R, Millat T, Soucaille P, Winzer K, Barrett DA, King J, Kim DH. Tomi-Andrino C, et al. PLoS Comput Biol. 2021 Jan 25;17(1):e1007694. doi: 10.1371/journal.pcbi.1007694. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33493151 Free PMC article.

10

A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications.

Pearcy N, Garavaglia M, Millat T, Gilbert JP, Song Y, Hartman H, Woods C, Tomi-Andrino C, Reddy Bommareddy R, Cho BK, Fell DA, Poolman M, King JR, Winzer K, Twycross J, Minton NP. Pearcy N, et al. Among authors: king jr. PLoS Comput Biol. 2022 May 23;18(5):e1010106. doi: 10.1371/journal.pcbi.1010106. eCollection 2022 May. PLoS Comput Biol. 2022. PMID: 35604933 Free PMC article.

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