Kim J - Search Results

1

Challenges and emerging directions in single-cell analysis.

Yuan GC, Cai L, Elowitz M, Enver T, Fan G, Guo G, Irizarry R, Kharchenko P, Kim J, Orkin S, Quackenbush J, Saadatpour A, Schroeder T, Shivdasani R, Tirosh I. Yuan GC, et al. Among authors: kim j. Genome Biol. 2017 May 8;18(1):84. doi: 10.1186/s13059-017-1218-y. Genome Biol. 2017. PMID: 28482897 Free PMC article. Review.

2

Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes.

Simola DF, Francis C, Sniegowski PD, Kim J. Simola DF, et al. Among authors: kim j. Genome Biol. 2010;11(10):R105. doi: 10.1186/gb-2010-11-10-r105. Epub 2010 Oct 22. Genome Biol. 2010. PMID: 20969771 Free PMC article.

3

IVT-seq reveals extreme bias in RNA sequencing.

Lahens NF, Kavakli IH, Zhang R, Hayer K, Black MB, Dueck H, Pizarro A, Kim J, Irizarry R, Thomas RS, Grant GR, Hogenesch JB. Lahens NF, et al. Among authors: kim j. Genome Biol. 2014 Jun 30;15(6):R86. doi: 10.1186/gb-2014-15-6-r86. Genome Biol. 2014. PMID: 24981968 Free PMC article.

4

Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation.

Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, Kim J. Dueck H, et al. Among authors: kim tk, kim j. Genome Biol. 2015 Jun 9;16(1):122. doi: 10.1186/s13059-015-0683-4. Genome Biol. 2015. PMID: 26056000 Free PMC article.

5

Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.

Kim KT, Lee HW, Lee HO, Kim SC, Seo YJ, Chung W, Eum HH, Nam DH, Kim J, Joo KM, Park WY. Kim KT, et al. Among authors: kim sc, kim j. Genome Biol. 2015 Jun 19;16(1):127. doi: 10.1186/s13059-015-0692-3. Genome Biol. 2015. PMID: 26084335 Free PMC article.

6

Single cell transcriptomics of noncoding RNAs and their cell-specificity.

Gawronski KAB, Kim J. Gawronski KAB, et al. Among authors: kim j. Wiley Interdiscip Rev RNA. 2017 Nov;8(6):10.1002/wrna.1433. doi: 10.1002/wrna.1433. Epub 2017 Aug 1. Wiley Interdiscip Rev RNA. 2017. PMID: 28762653 Free PMC article. Review.

7

Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data.

Jia C, Hu Y, Kelly D, Kim J, Li M, Zhang NR. Jia C, et al. Among authors: kim j. Nucleic Acids Res. 2017 Nov 2;45(19):10978-10988. doi: 10.1093/nar/gkx754. Nucleic Acids Res. 2017. PMID: 29036714 Free PMC article.

8

Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney.

Ransick A, Lindström NO, Liu J, Zhu Q, Guo JJ, Alvarado GF, Kim AD, Black HG, Kim J, McMahon AP. Ransick A, et al. Among authors: kim ad, kim j. Dev Cell. 2019 Nov 4;51(3):399-413.e7. doi: 10.1016/j.devcel.2019.10.005. Dev Cell. 2019. PMID: 31689386 Free PMC article.

9

Multi-omics integration in the age of million single-cell data.

Miao Z, Humphreys BD, McMahon AP, Kim J. Miao Z, et al. Among authors: kim j. Nat Rev Nephrol. 2021 Nov;17(11):710-724. doi: 10.1038/s41581-021-00463-x. Epub 2021 Aug 20. Nat Rev Nephrol. 2021. PMID: 34417589 Free PMC article. Review.

10

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).

Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP. Jain S, et al. Nat Cell Biol. 2023 Aug;25(8):1089-1100. doi: 10.1038/s41556-023-01194-w. Epub 2023 Jul 19. Nat Cell Biol. 2023. PMID: 37468756 Free PMC article. Review.

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