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Current progress and open challenges for applying deep learning across the biosciences.
Sapoval N, Aghazadeh A, Nute MG, Antunes DA, Balaji A, Baraniuk R, Barberan CJ, Dannenfelser R, Dun C, Edrisi M, Elworth RAL, Kille B, Kyrillidis A, Nakhleh L, Wolfe CR, Yan Z, Yao V, Treangen TJ. Sapoval N, et al. Among authors: kille b. Nat Commun. 2022 Apr 1;13(1):1728. doi: 10.1038/s41467-022-29268-7. Nat Commun. 2022. PMID: 35365602 Free PMC article. Review.
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates.
Mc Cartney AM, Mahmoud M, Jochum M, Agustinho DP, Zorman B, Al Khleifat A, Dabbaghie F, K Kesharwani R, Smolka M, Dawood M, Albin D, Aliyev E, Almabrazi H, Arslan A, Balaji A, Behera S, Billingsley K, L Cameron D, Daw J, T Dawson E, De Coster W, Du H, Dunn C, Esteban R, Jolly A, Kalra D, Liao C, Liu Y, Lu TY, M Havrilla J, M Khayat M, Marin M, Monlong J, Price S, Rafael Gener A, Ren J, Sagayaradj S, Sapoval N, Sinner C, C Soto D, Soylev A, Subramaniyan A, Syed N, Tadimeti N, Tater P, Vats P, Vaughn J, Walker K, Wang G, Zeng Q, Zhang S, Zhao T, Kille B, Biederstedt E, Chaisson M, English A, Kronenberg Z, J Treangen T, Hefferon T, Chin CS, Busby B, J Sedlazeck F. Mc Cartney AM, et al. Among authors: kille b. F1000Res. 2021 Mar 26;10:246. doi: 10.12688/f1000research.51477.2. eCollection 2021. F1000Res. 2021. PMID: 34621504 Free PMC article.
Bioinformatics-Guided Expansion and Discovery of Graspetides.
Ramesh S, Guo X, DiCaprio AJ, De Lio AM, Harris LA, Kille BL, Pogorelov TV, Mitchell DA. Ramesh S, et al. ACS Chem Biol. 2021 Dec 17;16(12):2787-2797. doi: 10.1021/acschembio.1c00672. Epub 2021 Nov 12. ACS Chem Biol. 2021. PMID: 34766760 Free PMC article.
Bioinformatic Expansion and Discovery of Thiopeptide Antibiotics.
Schwalen CJ, Hudson GA, Kille B, Mitchell DA. Schwalen CJ, et al. Among authors: kille b. J Am Chem Soc. 2018 Aug 1;140(30):9494-9501. doi: 10.1021/jacs.8b03896. Epub 2018 Jul 20. J Am Chem Soc. 2018. PMID: 29983054 Free PMC article.
Bioinformatic Mapping of Radical S-Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Containing Peptides.
Hudson GA, Burkhart BJ, DiCaprio AJ, Schwalen CJ, Kille B, Pogorelov TV, Mitchell DA. Hudson GA, et al. Among authors: kille b. J Am Chem Soc. 2019 May 22;141(20):8228-8238. doi: 10.1021/jacs.9b01519. Epub 2019 May 13. J Am Chem Soc. 2019. PMID: 31059252 Free PMC article.
Correction to "Bioinformatic Mapping of Radical S-Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Containing Peptides".
Hudson GA, Burkhart BJ, DiCaprio AJ, Schwalen CJ, Kille B, Pogorelov TV, Mitchell DA. Hudson GA, et al. Among authors: kille b. J Am Chem Soc. 2021 Jul 14;143(27):10479. doi: 10.1021/jacs.1c06285. Epub 2021 Jul 1. J Am Chem Soc. 2021. PMID: 34197098 No abstract available.
24 results