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Modeling the assembly order of multimeric heteroprotein complexes.
Peterson LX, Togawa Y, Esquivel-Rodriguez J, Terashi G, Christoffer C, Roy A, Shin WH, Kihara D. Peterson LX, et al. Among authors: kihara d. PLoS Comput Biol. 2018 Jan 12;14(1):e1005937. doi: 10.1371/journal.pcbi.1005937. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29329283 Free PMC article.
Function prediction of uncharacterized proteins.
Hawkins T, Kihara D. Hawkins T, et al. Among authors: kihara d. J Bioinform Comput Biol. 2007 Feb;5(1):1-30. doi: 10.1142/s0219720007002503. J Bioinform Comput Biol. 2007. PMID: 17477489 Review.
Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, Ko JS, Lee H, Seok C, Bourquard T, Bernauer J, Poupon A, Azé J, Soner S, Ovali SK, Ozbek P, Tal NB, Haliloglu T, Hwang H, Vreven T, Pierce BG, Weng Z, Pérez-Cano L, Pons C, Fernández-Recio J, Jiang F, Yang F, Gong X, Cao L, Xu X, Liu B, Wang P, Li C, Wang C, Robert CH, Guharoy M, Liu S, Huang Y, Li L, Guo D, Chen Y, Xiao Y, London N, Itzhaki Z, Schueler-Furman O, Inbar Y, Potapov V, Cohen M, Schreiber G, Tsuchiya Y, Kanamori E, Standley DM, Nakamura H, Kinoshita K, Driggers CM, Hall RG, Morgan JL, Hsu VL, Zhan J, Yang Y, Zhou Y, Kastritis PL, Bonvin AM, Zhang W, Camacho CJ, Kilambi KP, Sircar A, Gray JJ, Ohue M, Uchikoga N, Matsuzaki Y, Ishida T, Akiyama Y, Khashan R, Bush S, Fouches D, Tropsha A, Esquivel-Rodríguez J, Kihara D, Stranges PB, Jacak R, Kuhlman B, Huang SY, Zou X, Wodak SJ, Janin J, Baker D. Fleishman SJ, et al. Among authors: kihara d. J Mol Biol. 2011 Nov 25;414(2):289-302. doi: 10.1016/j.jmb.2011.09.031. Epub 2011 Sep 29. J Mol Biol. 2011. PMID: 22001016 Free PMC article.
Multi-LZerD: multiple protein docking for asymmetric complexes.
Esquivel-Rodríguez J, Yang YD, Kihara D. Esquivel-Rodríguez J, et al. Among authors: kihara d. Proteins. 2012 Jul;80(7):1818-33. doi: 10.1002/prot.24079. Epub 2012 May 8. Proteins. 2012. PMID: 22488467 Free PMC article.
222 results