Khorshid M - Search Results

1

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. Among authors: khorshid m. Cell. 2010 Apr 2;141(1):129-41. doi: 10.1016/j.cell.2010.03.009. Cell. 2010. PMID: 20371350 Free PMC article.

2

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. Among authors: khorshid m. J Vis Exp. 2010 Jul 2;(41):2034. doi: 10.3791/2034. J Vis Exp. 2010. PMID: 20644507 Free PMC article.

3

PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins.

Spitzer J, Hafner M, Landthaler M, Ascano M, Farazi T, Wardle G, Nusbaum J, Khorshid M, Burger L, Zavolan M, Tuschl T. Spitzer J, et al. Among authors: khorshid m. Methods Enzymol. 2014;539:113-61. doi: 10.1016/B978-0-12-420120-0.00008-6. Methods Enzymol. 2014. PMID: 24581442 Free PMC article.

4

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins.

Kishore S, Jaskiewicz L, Burger L, Hausser J, Khorshid M, Zavolan M. Kishore S, et al. Among authors: khorshid m. Nat Methods. 2011 May 15;8(7):559-64. doi: 10.1038/nmeth.1608. Nat Methods. 2011. PMID: 21572407

5

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins.

Khorshid M, Rodak C, Zavolan M. Khorshid M, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D245-52. doi: 10.1093/nar/gkq940. Epub 2010 Nov 17. Nucleic Acids Res. 2011. PMID: 21087992 Free PMC article.

6

A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.

Khorshid M, Hausser J, Zavolan M, van Nimwegen E. Khorshid M, et al. Nat Methods. 2013 Mar;10(3):253-5. doi: 10.1038/nmeth.2341. Epub 2013 Jan 20. Nat Methods. 2013. PMID: 23334102

7

Conserved generation of short products at piRNA loci.

Berninger P, Jaskiewicz L, Khorshid M, Zavolan M. Berninger P, et al. Among authors: khorshid m. BMC Genomics. 2011 Jan 19;12:46. doi: 10.1186/1471-2164-12-46. BMC Genomics. 2011. PMID: 21247452 Free PMC article.

8

Evaluation and comparison of the effects of a new paste containing 8% L-Arginine and CaCO3 plus KNO3 on dentinal tubules occlusion and dental sensitivity: a randomized, triple blinded clinical trial study.

Mohammadipour HS, Bagheri H, Babazadeh S, Khorshid M, Shooshtari Z, Shahri A. Mohammadipour HS, et al. Among authors: khorshid m. BMC Oral Health. 2024 Apr 29;24(1):507. doi: 10.1186/s12903-024-04298-3. BMC Oral Health. 2024. PMID: 38685035 Free PMC article. Clinical Trial.

9

An Overview on Recent Advances in Biomimetic Sensors for the Detection of Perfluoroalkyl Substances.

Ahmadi Tabar F, Lowdon JW, Bakhshi Sichani S, Khorshid M, Cleij TJ, Diliën H, Eersels K, Wagner P, van Grinsven B. Ahmadi Tabar F, et al. Among authors: khorshid m. Sensors (Basel). 2023 Dec 26;24(1):130. doi: 10.3390/s24010130. Sensors (Basel). 2023. PMID: 38202993 Free PMC article. Review.

10

Bioanalytical sensors using the heat-transfer method HTM and related techniques.

Wagner P, Bakhshi Sichani S, Khorshid M, Lieberzeit P, Losada-Pérez P, Yongabi D. Wagner P, et al. Among authors: khorshid m. Tech Mess. 2023 Oct 12;90(12):761-785. doi: 10.1515/teme-2023-0101. eCollection 2023 Dec. Tech Mess. 2023. PMID: 38046181 Free PMC article.

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