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VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.
Bagaev DV, Vroomans RMA, Samir J, Stervbo U, Rius C, Dolton G, Greenshields-Watson A, Attaf M, Egorov ES, Zvyagin IV, Babel N, Cole DK, Godkin AJ, Sewell AK, Kesmir C, Chudakov DM, Luciani F, Shugay M. Bagaev DV, et al. Among authors: kesmir c. Nucleic Acids Res. 2020 Jan 8;48(D1):D1057-D1062. doi: 10.1093/nar/gkz874. Nucleic Acids Res. 2020. PMID: 31588507 Free PMC article.
A mathematical model of protein degradation by the proteasome.
Luciani F, Keşmir C, Mishto M, Or-Guil M, de Boer RJ. Luciani F, et al. Among authors: kesmir c. Biophys J. 2005 Apr;88(4):2422-32. doi: 10.1529/biophysj.104.049221. Epub 2005 Jan 21. Biophys J. 2005. PMID: 15665121 Free PMC article.
VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.
Shugay M, Bagaev DV, Zvyagin IV, Vroomans RM, Crawford JC, Dolton G, Komech EA, Sycheva AL, Koneva AE, Egorov ES, Eliseev AV, Van Dyk E, Dash P, Attaf M, Rius C, Ladell K, McLaren JE, Matthews KK, Clemens EB, Douek DC, Luciani F, van Baarle D, Kedzierska K, Kesmir C, Thomas PG, Price DA, Sewell AK, Chudakov DM. Shugay M, et al. Among authors: kesmir c. Nucleic Acids Res. 2018 Jan 4;46(D1):D419-D427. doi: 10.1093/nar/gkx760. Nucleic Acids Res. 2018. PMID: 28977646 Free PMC article.
HLA class I allele promiscuity revisited.
Rao X, Hoof I, Costa AI, van Baarle D, Keşmir C. Rao X, et al. Among authors: kesmir c. Immunogenetics. 2011 Nov;63(11):691-701. doi: 10.1007/s00251-011-0552-6. Epub 2011 Jun 22. Immunogenetics. 2011. PMID: 21695550 Free PMC article.
Properties of MHC class I presented peptides that enhance immunogenicity.
Calis JJ, Maybeno M, Greenbaum JA, Weiskopf D, De Silva AD, Sette A, Keşmir C, Peters B. Calis JJ, et al. Among authors: kesmir c. PLoS Comput Biol. 2013 Oct;9(10):e1003266. doi: 10.1371/journal.pcbi.1003266. Epub 2013 Oct 24. PLoS Comput Biol. 2013. PMID: 24204222 Free PMC article.
82 results