Keränen SVE - Search Results

1

REDfly: the transcriptional regulatory element database for Drosophila.

Rivera J, Keränen SVE, Gallo SM, Halfon MS. Rivera J, et al. Among authors: keranen sve. Nucleic Acids Res. 2019 Jan 8;47(D1):D828-D834. doi: 10.1093/nar/gky957. Nucleic Acids Res. 2019. PMID: 30329093 Free PMC article.

2

REDfly: An Integrated Knowledgebase for Insect Regulatory Genomics.

Keränen SVE, Villahoz-Baleta A, Bruno AE, Halfon MS. Keränen SVE, et al. Insects. 2022 Jul 11;13(7):618. doi: 10.3390/insects13070618. Insects. 2022. PMID: 35886794 Free PMC article. Review.

3

Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy.

Arbel H, Basu S, Fisher WW, Hammonds AS, Wan KH, Park S, Weiszmann R, Booth BW, Keranen SV, Henriquez C, Shams Solari O, Bickel PJ, Biggin MD, Celniker SE, Brown JB. Arbel H, et al. Proc Natl Acad Sci U S A. 2019 Jan 15;116(3):900-908. doi: 10.1073/pnas.1808833115. Epub 2018 Dec 31. Proc Natl Acad Sci U S A. 2019. PMID: 30598455 Free PMC article.

4

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data.

Aswani A, Keränen SV, Brown J, Fowlkes CC, Knowles DW, Biggin MD, Bickel P, Tomlin CJ. Aswani A, et al. BMC Bioinformatics. 2010 Aug 4;11:413. doi: 10.1186/1471-2105-11-413. BMC Bioinformatics. 2010. PMID: 20684787 Free PMC article.

5

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.

Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW. Luengo Hendriks CL, et al. Genome Biol. 2006;7(12):R123. doi: 10.1186/gb-2006-7-12-r123. Genome Biol. 2006. PMID: 17184546 Free PMC article.

6

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. Fowlkes CC, et al. Cell. 2008 Apr 18;133(2):364-74. doi: 10.1016/j.cell.2008.01.053. Cell. 2008. PMID: 18423206 Free article.

7

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics.

Keränen SV, Fowlkes CC, Luengo Hendriks CL, Sudar D, Knowles DW, Malik J, Biggin MD. Keränen SV, et al. Genome Biol. 2006;7(12):R124. doi: 10.1186/gb-2006-7-12-r124. Genome Biol. 2006. PMID: 17184547 Free PMC article.

8

Visual exploration of three-dimensional gene expression using physical views and linked abstract views.

Weber GH, Rübel O, Huang MY, DePace AH, Fowlkes CC, Keränen SV, Luengo Hendriks CL, Hagen H, Knowles DW, Malik J, Biggin MD, Hamann B. Weber GH, et al. IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):296-309. doi: 10.1109/TCBB.2007.70249. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19407353 Free PMC article.

9

A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.

Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH. Fowlkes CC, et al. PLoS Genet. 2011 Oct;7(10):e1002346. doi: 10.1371/journal.pgen.1002346. Epub 2011 Oct 27. PLoS Genet. 2011. PMID: 22046143 Free PMC article.

10

Volumetric Semantic Segmentation using Pyramid Context Features.

Barron JT, Arbeláez P, Keränen SV, Biggin MD, Knowles DW, Malik J. Barron JT, et al. Proc IEEE Int Conf Comput Vis. 2013 Dec;2013:3448-3455. doi: 10.1109/ICCV.2013.428. Proc IEEE Int Conf Comput Vis. 2013. PMID: 26029008 Free PMC article.

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