Kennedy SD - Search Results

1

Structure of phosphorylated SF1 bound to U2AF⁶⁵ in an essential splicing factor complex.

Wang W, Maucuer A, Gupta A, Manceau V, Thickman KR, Bauer WJ, Kennedy SD, Wedekind JE, Green MR, Kielkopf CL. Wang W, et al. Among authors: kennedy sd. Structure. 2013 Feb 5;21(2):197-208. doi: 10.1016/j.str.2012.10.020. Epub 2012 Dec 27. Structure. 2013. PMID: 23273425 Free PMC article.

2

Dynamic stacking of an expected branch point adenosine in duplexes containing pseudouridine-modified or unmodified U2 snRNA sites.

Kennedy SD, Bauer WJ, Wang W, Kielkopf CL. Kennedy SD, et al. Biochem Biophys Res Commun. 2019 Apr 2;511(2):416-421. doi: 10.1016/j.bbrc.2019.02.073. Epub 2019 Feb 21. Biochem Biophys Res Commun. 2019. PMID: 30797552 Free PMC article.

3

Structural features of a 3' splice site in influenza a.

Chen JL, Kennedy SD, Turner DH. Chen JL, et al. Among authors: kennedy sd. Biochemistry. 2015 Jun 2;54(21):3269-85. doi: 10.1021/acs.biochem.5b00012. Epub 2015 May 21. Biochemistry. 2015. PMID: 25909229 Free PMC article.

4

Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides.

Kauffmann AD, Kennedy SD, Moss WN, Kierzek E, Kierzek R, Turner DH. Kauffmann AD, et al. Among authors: kennedy sd. RNA. 2022 Apr;28(4):508-522. doi: 10.1261/rna.078951.121. Epub 2022 Jan 4. RNA. 2022. PMID: 34983822 Free PMC article.

5

Novel conformation of an RNA structural switch.

Kennedy SD, Kierzek R, Turner DH. Kennedy SD, et al. Biochemistry. 2012 Nov 20;51(46):9257-9. doi: 10.1021/bi301372t. Epub 2012 Nov 12. Biochemistry. 2012. PMID: 23134175 Free PMC article.

6

NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs.

Tolbert BS, Kennedy SD, Schroeder SJ, Krugh TR, Turner DH. Tolbert BS, et al. Among authors: kennedy sd. Biochemistry. 2007 Feb 13;46(6):1511-22. doi: 10.1021/bi061350m. Epub 2007 Jan 20. Biochemistry. 2007. PMID: 17279616 Free PMC article.

7

Structure determination of noncanonical RNA motifs guided by ¹H NMR chemical shifts.

Sripakdeevong P, Cevec M, Chang AT, Erat MC, Ziegeler M, Zhao Q, Fox GE, Gao X, Kennedy SD, Kierzek R, Nikonowicz EP, Schwalbe H, Sigel RK, Turner DH, Das R. Sripakdeevong P, et al. Among authors: kennedy sd. Nat Methods. 2014 Apr;11(4):413-6. doi: 10.1038/nmeth.2876. Epub 2014 Mar 2. Nat Methods. 2014. PMID: 24584194 Free PMC article.

8

Secondary structure of a conserved domain in an intron of influenza A M1 mRNA.

Jiang T, Kennedy SD, Moss WN, Kierzek E, Turner DH. Jiang T, et al. Among authors: kennedy sd. Biochemistry. 2014 Aug 19;53(32):5236-48. doi: 10.1021/bi500611j. Epub 2014 Aug 6. Biochemistry. 2014. PMID: 25026548 Free PMC article.

9

Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops.

Berger KD, Kennedy SD, Schroeder SJ, Znosko BM, Sun H, Mathews DH, Turner DH. Berger KD, et al. Among authors: kennedy sd. Biochemistry. 2018 Apr 10;57(14):2121-2131. doi: 10.1021/acs.biochem.7b01306. Epub 2018 Mar 23. Biochemistry. 2018. PMID: 29570276 Free PMC article.

10

Testing the nearest neighbor model for canonical RNA base pairs: revision of GU parameters.

Chen JL, Dishler AL, Kennedy SD, Yildirim I, Liu B, Turner DH, Serra MJ. Chen JL, et al. Among authors: kennedy sd. Biochemistry. 2012 Apr 24;51(16):3508-22. doi: 10.1021/bi3002709. Epub 2012 Apr 10. Biochemistry. 2012. PMID: 22490167 Free PMC article.

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