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Page 1
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium; Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium. Nielsen HB, et al. Among authors: kennedy s. Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6. Nat Biotechnol. 2014. PMID: 24997787
Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777.
Guédon E, Delorme C, Pons N, Cruaud C, Loux V, Couloux A, Gautier C, Sanchez N, Layec S, Galleron N, Almeida M, van de Guchte M, Kennedy SP, Ehrlich SD, Gibrat JF, Wincker P, Renault P. Guédon E, et al. Among authors: kennedy sp. J Bacteriol. 2011 Sep;193(18):5024-5. doi: 10.1128/JB.05390-11. Epub 2011 Jul 8. J Bacteriol. 2011. PMID: 21742871 Free PMC article.
Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3.
Delorme C, Guédon E, Pons N, Cruaud C, Couloux A, Loux V, Chiapello H, Poyart C, Gautier C, Sanchez N, Almeida M, Kennedy SP, Ehrlich SD, Gibrat JF, Wincker P, Renault P. Delorme C, et al. Among authors: kennedy sp. J Bacteriol. 2011 Sep;193(18):5041-2. doi: 10.1128/JB.05416-11. Epub 2011 Jul 8. J Bacteriol. 2011. PMID: 21742894 Free PMC article.
Richness of human gut microbiome correlates with metabolic markers.
Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clément K, Doré J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T; MetaHIT consortium; Bork P, Wang J, Ehrlich SD, Pedersen O. Le Chatelier E, et al. Among authors: kennedy s. Nature. 2013 Aug 29;500(7464):541-6. doi: 10.1038/nature12506. Nature. 2013. PMID: 23985870
Dietary intervention impact on gut microbial gene richness.
Cotillard A, Kennedy SP, Kong LC, Prifti E, Pons N, Le Chatelier E, Almeida M, Quinquis B, Levenez F, Galleron N, Gougis S, Rizkalla S, Batto JM, Renault P; ANR MicroObes consortium; Doré J, Zucker JD, Clément K, Ehrlich SD. Cotillard A, et al. Among authors: kennedy sp. Nature. 2013 Aug 29;500(7464):585-8. doi: 10.1038/nature12480. Nature. 2013. PMID: 23985875 Clinical Trial.
An integrated catalog of reference genes in the human gut microbiome.
Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima JR, Prifti E, Nielsen T, Juncker AS, Manichanh C, Chen B, Zhang W, Levenez F, Wang J, Xu X, Xiao L, Liang S, Zhang D, Zhang Z, Chen W, Zhao H, Al-Aama JY, Edris S, Yang H, Wang J, Hansen T, Nielsen HB, Brunak S, Kristiansen K, Guarner F, Pedersen O, Doré J, Ehrlich SD; MetaHIT Consortium; Bork P, Wang J; MetaHIT Consortium. Li J, et al. Nat Biotechnol. 2014 Aug;32(8):834-41. doi: 10.1038/nbt.2942. Epub 2014 Jul 6. Nat Biotechnol. 2014. PMID: 24997786
Alterations of the human gut microbiome in liver cirrhosis.
Qin N, Yang F, Li A, Prifti E, Chen Y, Shao L, Guo J, Le Chatelier E, Yao J, Wu L, Zhou J, Ni S, Liu L, Pons N, Batto JM, Kennedy SP, Leonard P, Yuan C, Ding W, Chen Y, Hu X, Zheng B, Qian G, Xu W, Ehrlich SD, Zheng S, Li L. Qin N, et al. Among authors: kennedy sp. Nature. 2014 Sep 4;513(7516):59-64. doi: 10.1038/nature13568. Epub 2014 Jul 23. Nature. 2014. PMID: 25079328
Changes of the human gut microbiome induced by a fermented milk product.
Veiga P, Pons N, Agrawal A, Oozeer R, Guyonnet D, Brazeilles R, Faurie JM, van Hylckama Vlieg JE, Houghton LA, Whorwell PJ, Ehrlich SD, Kennedy SP. Veiga P, et al. Among authors: kennedy sp. Sci Rep. 2014 Sep 11;4:6328. doi: 10.1038/srep06328. Sci Rep. 2014. PMID: 25209713 Free PMC article.
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products.
Almeida M, Hébert A, Abraham AL, Rasmussen S, Monnet C, Pons N, Delbès C, Loux V, Batto JM, Leonard P, Kennedy S, Ehrlich SD, Pop M, Montel MC, Irlinger F, Renault P. Almeida M, et al. Among authors: kennedy s. BMC Genomics. 2014 Dec 13;15(1):1101. doi: 10.1186/1471-2164-15-1101. BMC Genomics. 2014. PMID: 25496341 Free PMC article.
3,067 results