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Page 1
Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.
Hu B, Canon S, Eloe-Fadrosh EA, Anubhav, Babinski M, Corilo Y, Davenport K, Duncan WD, Fagnan K, Flynn M, Foster B, Hays D, Huntemann M, Jackson EKP, Kelliher J, Li PE, Lo CC, Mans D, McCue LA, Mouncey N, Mungall CJ, Piehowski PD, Purvine SO, Smith M, Varghese NJ, Winston D, Xu Y, Chain PSG. Hu B, et al. Among authors: kelliher j. Front Bioinform. 2022 Jan 17;1:826370. doi: 10.3389/fbinf.2021.826370. eCollection 2021. Front Bioinform. 2022. PMID: 36303775 Free PMC article. Review.
Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi.
Junier P, Cailleau G, Palmieri I, Vallotton C, Trautschold OC, Junier T, Paul C, Bregnard D, Palmieri F, Estoppey A, Buffi M, Lohberger A, Robinson A, Kelliher JM, Davenport K, House GL, Morales D, Gallegos-Graves V, Dichosa AEK, Lupini S, Nguyen HN, Young JD, Rodrigues DF, Parra-Vasquez ANG, Bindschedler S, Chain PSG. Junier P, et al. FEMS Microbiol Ecol. 2021 Feb 11;97(2):fiab003. doi: 10.1093/femsec/fiab003. FEMS Microbiol Ecol. 2021. PMID: 33440006 Free PMC article.
Widespread bacterial diversity within the bacteriome of fungi.
Robinson AJ, House GL, Morales DP, Kelliher JM, Gallegos-Graves V, LeBrun ES, Davenport KW, Palmieri F, Lohberger A, Bregnard D, Estoppey A, Buffi M, Paul C, Junier T, Hervé V, Cailleau G, Lupini S, Nguyen HN, Zheng AO, Gimenes LJ, Bindschedller S, Rodrigues DF, Werner JH, Young JD, Junier P, Chain PSG. Robinson AJ, et al. Among authors: kelliher jm. Commun Biol. 2021 Oct 7;4(1):1168. doi: 10.1038/s42003-021-02693-y. Commun Biol. 2021. PMID: 34621007 Free PMC article.
Cohort-based learning for microbiome research community standards.
Kelliher JM, Rudolph M, Vangay P, Abbas A, Borton MA, Davenport ER, Davenport KW, Erazo NG, Herman C, Karstens L, Kocurek B, Lutz HL, Myers KS, Ockert I, Rodriguez FE, Santistevan C, Saunders JK, Smith ML, Vogtmann E, Windsor A, Wood-Charlson EM, Woodley L, Eloe-Fadrosh EA. Kelliher JM, et al. Nat Microbiol. 2023 May;8(5):751-753. doi: 10.1038/s41564-023-01361-7. Nat Microbiol. 2023. PMID: 37069400 No abstract available.
A centralized resource for bacterial-fungal interactions research.
Robinson A, Babinski M, Xu Y, Kelliher J, Longley R, Chain P. Robinson A, et al. Among authors: kelliher j. Fungal Biol. 2023 May;127(5):1005-1009. doi: 10.1016/j.funbio.2023.04.002. Epub 2023 Apr 10. Fungal Biol. 2023. PMID: 37142360 Free article.
Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp.
Cailleau G, Hanson BT, Cravero M, Zhioua S, Hilpish P, Ruiz C, Robinson AJ, Kelliher JM, Morales D, Gallegos-Graves V, Bonito G, Chain PSG, Bindschedler S, Junier P. Cailleau G, et al. Among authors: kelliher jm. Front Fungal Biol. 2023 Dec 13;4:1285531. doi: 10.3389/ffunb.2023.1285531. eCollection 2023. Front Fungal Biol. 2023. PMID: 38155707 Free PMC article.
Complete Genome Sequence of a Parabacteroides distasonis Strain (CavFT hAR46) Isolated from a Gut Wall-Cavitating Microlesion in a Patient with Severe Crohn's Disease.
Yang F, Kumar A, Davenport KW, Kelliher JM, Ezeji JC, Good CE, Jacobs MR, Conger M, West G, Fiocchi C, Cominelli F, Dichosa AEK, Rodriguez-Palacios A. Yang F, et al. Microbiol Resour Announc. 2019 Sep 5;8(36):e00585-19. doi: 10.1128/MRA.00585-19. Microbiol Resour Announc. 2019. PMID: 31488526 Free PMC article.
53 results