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sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.
Aparicio-Puerta E, Gómez-Martín C, Giannoukakos S, Medina JM, Scheepbouwer C, García-Moreno A, Carmona-Saez P, Fromm B, Pegtel M, Keller A, Marchal JA, Hackenberg M. Aparicio-Puerta E, et al. Among authors: keller a. Nucleic Acids Res. 2022 Jul 5;50(W1):W710-W717. doi: 10.1093/nar/gkac363. Nucleic Acids Res. 2022. PMID: 35556129 Free PMC article.
miRCarta: a central repository for collecting miRNA candidates.
Backes C, Fehlmann T, Kern F, Kehl T, Lenhof HP, Meese E, Keller A. Backes C, et al. Among authors: keller a. Nucleic Acids Res. 2018 Jan 4;46(D1):D160-D167. doi: 10.1093/nar/gkx851. Nucleic Acids Res. 2018. PMID: 29036653 Free PMC article.
A comprehensive profile of circulating RNAs in human serum.
Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB. Umu SU, et al. Among authors: keller a. RNA Biol. 2018 Feb 1;15(2):242-250. doi: 10.1080/15476286.2017.1403003. Epub 2017 Dec 8. RNA Biol. 2018. PMID: 29219730 Free PMC article.
An estimate of the total number of true human miRNAs.
Alles J, Fehlmann T, Fischer U, Backes C, Galata V, Minet M, Hart M, Abu-Halima M, Grässer FA, Lenhof HP, Keller A, Meese E. Alles J, et al. Among authors: keller a. Nucleic Acids Res. 2019 Apr 23;47(7):3353-3364. doi: 10.1093/nar/gkz097. Nucleic Acids Res. 2019. PMID: 30820533 Free PMC article.
The sncRNA Zoo: a repository for circulating small noncoding RNAs in animals.
Fehlmann T, Backes C, Pirritano M, Laufer T, Galata V, Kern F, Kahraman M, Gasparoni G, Ludwig N, Lenhof HP, Gregersen HA, Francke R, Meese E, Simon M, Keller A. Fehlmann T, et al. Among authors: keller a. Nucleic Acids Res. 2019 May 21;47(9):4431-4441. doi: 10.1093/nar/gkz227. Nucleic Acids Res. 2019. PMID: 30937442 Free PMC article.
Quo vadis microRNAs?
Fromm B, Keller A, Yang X, Friedlander MR, Peterson KJ, Griffiths-Jones S. Fromm B, et al. Among authors: keller a. Trends Genet. 2020 Jul;36(7):461-463. doi: 10.1016/j.tig.2020.03.007. Epub 2020 Apr 16. Trends Genet. 2020. PMID: 32544447
Quantitative and time-resolved miRNA pattern of early human T cell activation.
Diener C, Hart M, Kehl T, Rheinheimer S, Ludwig N, Krammes L, Pawusch S, Lenhof K, Tänzer T, Schub D, Sester M, Walch-Rückheim B, Keller A, Lenhof HP, Meese E. Diener C, et al. Among authors: keller a. Nucleic Acids Res. 2020 Oct 9;48(18):10164-10183. doi: 10.1093/nar/gkaa788. Nucleic Acids Res. 2020. PMID: 32990751 Free PMC article.
Validation of human microRNA target pathways enables evaluation of target prediction tools.
Kern F, Krammes L, Danz K, Diener C, Kehl T, Küchler O, Fehlmann T, Kahraman M, Rheinheimer S, Aparicio-Puerta E, Wagner S, Ludwig N, Backes C, Lenhof HP, von Briesen H, Hart M, Keller A, Meese E. Kern F, et al. Among authors: keller a. Nucleic Acids Res. 2021 Jan 11;49(1):127-144. doi: 10.1093/nar/gkaa1161. Nucleic Acids Res. 2021. PMID: 33305319 Free PMC article.
Encyclopedia of tools for the analysis of miRNA isoforms.
Schmartz GP, Kern F, Fehlmann T, Wagner V, Fromm B, Keller A. Schmartz GP, et al. Among authors: keller a. Brief Bioinform. 2021 Jul 20;22(4):bbaa346. doi: 10.1093/bib/bbaa346. Brief Bioinform. 2021. PMID: 33313643
miRTargetLink 2.0-interactive miRNA target gene and target pathway networks.
Kern F, Aparicio-Puerta E, Li Y, Fehlmann T, Kehl T, Wagner V, Ray K, Ludwig N, Lenhof HP, Meese E, Keller A. Kern F, et al. Among authors: keller a. Nucleic Acids Res. 2021 Jul 2;49(W1):W409-W416. doi: 10.1093/nar/gkab297. Nucleic Acids Res. 2021. PMID: 34009375 Free PMC article.
2,441 results