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Designing biomedical proteomics experiments: state-of-the-art and future perspectives.
Expert Rev Proteomics. 2016 May;13(5):495-511. doi: 10.1586/14789450.2016.1172967. Epub 2016 Apr 25.
Expert Rev Proteomics. 2016.
PMID: 27031651
Review.
Machine learning applications in proteomics research: how the past can boost the future.
Kelchtermans P, Bittremieux W, De Grave K, Degroeve S, Ramon J, Laukens K, Valkenborg D, Barsnes H, Martens L.
Kelchtermans P, et al.
Proteomics. 2014 Mar;14(4-5):353-66. doi: 10.1002/pmic.201300289. Epub 2014 Jan 21.
Proteomics. 2014.
PMID: 24323524
Free article.
Review.
Item in Clipboard
qcML: an exchange format for quality control metrics from mass spectrometry experiments.
Walzer M, Pernas LE, Nasso S, Bittremieux W, Nahnsen S, Kelchtermans P, Pichler P, van den Toorn HW, Staes A, Vandenbussche J, Mazanek M, Taus T, Scheltema RA, Kelstrup CD, Gatto L, van Breukelen B, Aiche S, Valkenborg D, Laukens K, Lilley KS, Olsen JV, Heck AJ, Mechtler K, Aebersold R, Gevaert K, Vizcaíno JA, Hermjakob H, Kohlbacher O, Martens L.
Walzer M, et al. Among authors: kelchtermans p.
Mol Cell Proteomics. 2014 Aug;13(8):1905-13. doi: 10.1074/mcp.M113.035907. Epub 2014 Apr 23.
Mol Cell Proteomics. 2014.
PMID: 24760958
Free PMC article.
Item in Clipboard
jqcML: an open-source java API for mass spectrometry quality control data in the qcML format.
Bittremieux W, Kelchtermans P, Valkenborg D, Martens L, Laukens K.
Bittremieux W, et al. Among authors: kelchtermans p.
J Proteome Res. 2014 Jul 3;13(7):3484-7. doi: 10.1021/pr401274z. Epub 2014 Jun 17.
J Proteome Res. 2014.
PMID: 24906114
Item in Clipboard
iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring.
Bittremieux W, Willems H, Kelchtermans P, Martens L, Laukens K, Valkenborg D.
Bittremieux W, et al. Among authors: kelchtermans p.
J Proteome Res. 2015 May 1;14(5):2360-6. doi: 10.1021/acs.jproteome.5b00127. Epub 2015 Apr 2.
J Proteome Res. 2015.
PMID: 25798920
Item in Clipboard
Open-Source, Platform-Independent Library and Online Scripting Environment for Accessing Thermo Scientific RAW Files.
Kelchtermans P, Silva AS, Argentini A, Staes A, Vandenbussche J, Laukens K, Valkenborg D, Martens L.
Kelchtermans P, et al.
J Proteome Res. 2015 Nov 6;14(11):4940-3. doi: 10.1021/acs.jproteome.5b00778. Epub 2015 Oct 29.
J Proteome Res. 2015.
PMID: 26477298
Item in Clipboard
Asn3, a reliable, robust, and universal lock mass for improved accuracy in LC-MS and LC-MS/MS.
Staes A, Vandenbussche J, Demol H, Goethals M, Yilmaz Ş, Hulstaert N, Degroeve S, Kelchtermans P, Martens L, Gevaert K.
Staes A, et al. Among authors: kelchtermans p.
Anal Chem. 2013 Nov 19;85(22):11054-60. doi: 10.1021/ac4027093. Epub 2013 Nov 4.
Anal Chem. 2013.
PMID: 24134513
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