Kasahara K - Search Results

1

Structural basis of transcription regulation by CNC family transcription factor, Nrf2.

Sengoku T, Shiina M, Suzuki K, Hamada K, Sato K, Uchiyama A, Kobayashi S, Oguni A, Itaya H, Kasahara K, Moriwaki H, Watanabe C, Honma T, Okada C, Baba S, Ohta T, Motohashi H, Yamamoto M, Ogata K. Sengoku T, et al. Among authors: kasahara k. Nucleic Acids Res. 2022 Nov 28;50(21):12543-12557. doi: 10.1093/nar/gkac1102. Nucleic Acids Res. 2022. PMID: 36454022 Free PMC article.

2

Molecular mechanisms of cooperative binding of transcription factors Runx1-CBFβ-Ets1 on the TCRα gene enhancer.

Kasahara K, Shiina M, Fukuda I, Ogata K, Nakamura H. Kasahara K, et al. PLoS One. 2017 Feb 23;12(2):e0172654. doi: 10.1371/journal.pone.0172654. eCollection 2017. PLoS One. 2017. PMID: 28231333 Free PMC article.

3

Phosphorylation of an intrinsically disordered region of Ets1 shifts a multi-modal interaction ensemble to an auto-inhibitory state.

Kasahara K, Shiina M, Higo J, Ogata K, Nakamura H. Kasahara K, et al. Nucleic Acids Res. 2018 Mar 16;46(5):2243-2251. doi: 10.1093/nar/gkx1297. Nucleic Acids Res. 2018. PMID: 29309620 Free PMC article.

4

myPresto/omegagene 2020: a molecular dynamics simulation engine for virtual-system coupled sampling.

Kasahara K, Terazawa H, Itaya H, Goto S, Nakamura H, Takahashi T, Higo J. Kasahara K, et al. Biophys Physicobiol. 2020 Oct 15;17:140-146. doi: 10.2142/biophysico.BSJ-2020013. eCollection 2020. Biophys Physicobiol. 2020. PMID: 33240741 Free PMC article.

5

All-Atom Molecular Dynamics Elucidating Molecular Mechanisms of Single-Transmembrane Model Peptide Dimerization in a Lipid Bilayer.

Itaya H, Kasahara K, Xie Q, Yano Y, Matsuzaki K, Takahashi T. Itaya H, et al. Among authors: kasahara k. ACS Omega. 2021 Apr 22;6(17):11458-11465. doi: 10.1021/acsomega.1c00482. eCollection 2021 May 4. ACS Omega. 2021. PMID: 34056301 Free PMC article.

6

Information quantity for secondary structure propensities of protein subsequences in the Protein Data Bank.

Kondo R, Kasahara K, Takahashi T. Kondo R, et al. Among authors: kasahara k. Biophys Physicobiol. 2022 Feb 8;19:1-12. doi: 10.2142/biophysico.bppb-v19.0002. eCollection 2022. Biophys Physicobiol. 2022. PMID: 35532457 Free PMC article.

7

Landscape of protein-small ligand binding modes.

Kasahara K, Kinoshita K. Kasahara K, et al. Protein Sci. 2016 Sep;25(9):1659-71. doi: 10.1002/pro.2971. Epub 2016 Jul 4. Protein Sci. 2016. PMID: 27327045 Free PMC article.

8

Unfolding of α-helical 20-residue poly-glutamic acid analyzed by multiple runs of canonical molecular dynamics simulations.

Ogasawara N, Kasahara K, Iwai R, Takahashi T. Ogasawara N, et al. Among authors: kasahara k. PeerJ. 2018 May 15;6:e4769. doi: 10.7717/peerj.4769. eCollection 2018. PeerJ. 2018. PMID: 29780670 Free PMC article.

9

Molecular Mechanisms of Functional Modulation of Transcriptional Coactivator PC4 via Phosphorylation on Its Intrinsically Disordered Region.

Xie Q, Kasahara K, Higo J, Takahashi T. Xie Q, et al. Among authors: kasahara k. ACS Omega. 2023 Apr 11;8(16):14572-14582. doi: 10.1021/acsomega.3c00364. eCollection 2023 Apr 25. ACS Omega. 2023. PMID: 37125110 Free PMC article.

10

Influence of various parameters in the replica-exchange molecular dynamics method: Number of replicas, replica-exchange frequency, and thermostat coupling time constant.

Iwai R, Kasahara K, Takahashi T. Iwai R, et al. Among authors: kasahara k. Biophys Physicobiol. 2018 Aug 8;15:165-172. doi: 10.2142/biophysico.15.0_165. eCollection 2018. Biophys Physicobiol. 2018. PMID: 30250775 Free PMC article. Review.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

1,336 results

Search Page