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Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420.
Kristiansen R, Dueholm MS, Bank S, Nielsen PH, Karst SM, Cattoir V, Lienhard R, Grisold AJ, Olsen AB, Reinhard M, Søby KM, Christensen JJ, Prag J, Thomsen TR. Kristiansen R, et al. Among authors: karst sm. Genome Announc. 2014 Sep 4;2(5):e00880-14. doi: 10.1128/genomeA.00880-14. Genome Announc. 2014. PMID: 25189588 Free PMC article.
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project 500 (EMP500) Consortium. Shaffer JP, et al. Among authors: karst sm. Nat Microbiol. 2022 Dec;7(12):2128-2150. doi: 10.1038/s41564-022-01266-x. Epub 2022 Nov 28. Nat Microbiol. 2022. PMID: 36443458 Free PMC article.
Greengenes2 unifies microbial data in a single reference tree.
McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. McDonald D, et al. Among authors: karst sm. Nat Biotechnol. 2024 May;42(5):715-718. doi: 10.1038/s41587-023-01845-1. Epub 2023 Jul 27. Nat Biotechnol. 2024. PMID: 37500913 Free PMC article.
Survival and activity of individual bioaugmentation strains.
Dueholm MS, Marques IG, Karst SM, D'Imperio S, Tale VP, Lewis D, Nielsen PH, Nielsen JL. Dueholm MS, et al. Among authors: karst sm. Bioresour Technol. 2015 Jun;186:192-199. doi: 10.1016/j.biortech.2015.02.111. Epub 2015 Mar 14. Bioresour Technol. 2015. PMID: 25817029
MiDAS: the field guide to the microbes of activated sludge.
McIlroy SJ, Saunders AM, Albertsen M, Nierychlo M, McIlroy B, Hansen AA, Karst SM, Nielsen JL, Nielsen PH. McIlroy SJ, et al. Among authors: karst sm. Database (Oxford). 2015 Jun 27;2015:bav062. doi: 10.1093/database/bav062. Print 2015. Database (Oxford). 2015. PMID: 26120139 Free PMC article.
84 results