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Whole blood transcriptomics identifies subclasses of pediatric septic shock.
Crit Care. 2023 Dec 8;27(1):486. doi: 10.1186/s13054-023-04689-y.
Crit Care. 2023.
PMID: 38066613
Free PMC article.
Whole Blood Transcriptomics Identifies Subclasses of Pediatric Septic Shock.
Yang JO, Zinter MS, Pellegrini M, Wong MY, Gala K, Markovic D, Nadel B, Peng K, Do N, Mangul S, Nadkarni VM, Karlsberg A, Deshpande D, Butte MJ, Asaro L, Agus M, Sapru A.
Yang JO, et al. Among authors: karlsberg a.
Res Sq [Preprint]. 2023 Aug 28:rs.3.rs-3267057. doi: 10.21203/rs.3.rs-3267057/v1.
Res Sq. 2023.
PMID: 37693502
Free PMC article.
Updated.
Preprint.
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Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.
Peng K, Nowicki TS, Campbell K, Vahed M, Peng D, Meng Y, Nagareddy A, Huang YN, Karlsberg A, Miller Z, Brito J, Nadel B, Pak VM, Abedalthagafi MS, Burkhardt AM, Alachkar H, Ribas A, Mangul S.
Peng K, et al. Among authors: karlsberg a.
Brief Bioinform. 2023 Jul 20;24(4):bbad220. doi: 10.1093/bib/bbad220.
Brief Bioinform. 2023.
PMID: 37291798
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RNA-seq data science: From raw data to effective interpretation.
Deshpande D, Chhugani K, Chang Y, Karlsberg A, Loeffler C, Zhang J, Muszyńska A, Munteanu V, Yang H, Rotman J, Tao L, Balliu B, Tseng E, Eskin E, Zhao F, Mohammadi P, P Łabaj P, Mangul S.
Deshpande D, et al. Among authors: karlsberg a.
Front Genet. 2023 Mar 13;14:997383. doi: 10.3389/fgene.2023.997383. eCollection 2023.
Front Genet. 2023.
PMID: 36999049
Free PMC article.
Review.
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Correction to: Improving the usability and comprehensiveness of microbial databases.
Loeffler C, Karlsberg A, Martin LS, Eskin E, Koslicki D, Mangul S.
Loeffler C, et al. Among authors: karlsberg a.
BMC Biol. 2020 Jul 28;18(1):92. doi: 10.1186/s12915-020-00831-2.
BMC Biol. 2020.
PMID: 32723395
Free PMC article.
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Improving the usability and comprehensiveness of microbial databases.
Loeffler C, Karlsberg A, Martin LS, Eskin E, Koslicki D, Mangul S.
Loeffler C, et al. Among authors: karlsberg a.
BMC Biol. 2020 Apr 7;18(1):37. doi: 10.1186/s12915-020-0756-z.
BMC Biol. 2020.
PMID: 32264902
Free PMC article.
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Benchmarking of computational error-correction methods for next-generation sequencing data.
Mitchell K, Brito JJ, Mandric I, Wu Q, Knyazev S, Chang S, Martin LS, Karlsberg A, Gerasimov E, Littman R, Hill BL, Wu NC, Yang HT, Hsieh K, Chen L, Littman E, Shabani T, Enik G, Yao D, Sun R, Schroeder J, Eskin E, Zelikovsky A, Skums P, Pop M, Mangul S.
Mitchell K, et al. Among authors: karlsberg a.
Genome Biol. 2020 Mar 17;21(1):71. doi: 10.1186/s13059-020-01988-3.
Genome Biol. 2020.
PMID: 32183840
Free PMC article.
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