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Modeling the effects of EMT-immune dynamics on carcinoma disease progression.
Commun Biol. 2021 Aug 18;4(1):983. doi: 10.1038/s42003-021-02499-y.
Commun Biol. 2021.
PMID: 34408236
Free PMC article.
Cell lineage and communication network inference via optimization for single-cell transcriptomics.
Wang S, Karikomi M, MacLean AL, Nie Q.
Wang S, et al.
Nucleic Acids Res. 2019 Jun 20;47(11):e66. doi: 10.1093/nar/gkz204.
Nucleic Acids Res. 2019.
PMID: 30923815
Free PMC article.
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Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development.
Tatarakis D, Cang Z, Wu X, Sharma PP, Karikomi M, MacLean AL, Nie Q, Schilling TF.
Tatarakis D, et al.
Cell Rep. 2021 Dec 21;37(12):110140. doi: 10.1016/j.celrep.2021.110140.
Cell Rep. 2021.
PMID: 34936864
Free PMC article.
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DURIAN: an integrative deconvolution and imputation method for robust signaling analysis of single-cell transcriptomics data.
Karikomi M, Zhou P, Nie Q.
Karikomi M, et al.
Brief Bioinform. 2022 Jul 18;23(4):bbac223. doi: 10.1093/bib/bbac223.
Brief Bioinform. 2022.
PMID: 35709795
Free PMC article.
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Single-cell analysis of human basal cell carcinoma reveals novel regulators of tumor growth and the tumor microenvironment.
Guerrero-Juarez CF, Lee GH, Liu Y, Wang S, Karikomi M, Sha Y, Chow RY, Nguyen TTL, Iglesias VS, Aasi S, Drummond ML, Nie Q, Sarin K, Atwood SX.
Guerrero-Juarez CF, et al.
Sci Adv. 2022 Jun 10;8(23):eabm7981. doi: 10.1126/sciadv.abm7981. Epub 2022 Jun 10.
Sci Adv. 2022.
PMID: 35687691
Free PMC article.
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Allele-specific tumor spectrum in pten knockin mice.
Wang H, Karikomi M, Naidu S, Rajmohan R, Caserta E, Chen HZ, Rawahneh M, Moffitt J, Stephens JA, Fernandez SA, Weinstein M, Wang D, Sadee W, La Perle K, Stromberg P, Rosol TJ, Eng C, Ostrowski MC, Leone G.
Wang H, et al.
Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5142-7. doi: 10.1073/pnas.0912524107. Epub 2010 Mar 1.
Proc Natl Acad Sci U S A. 2010.
PMID: 20194734
Free PMC article.
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Noncatalytic PTEN missense mutation predisposes to organ-selective cancer development in vivo.
Caserta E, Egriboz O, Wang H, Martin C, Koivisto C, Pecót T, Kladney RD, Shen C, Shim KS, Pham T, Karikomi MK, Mauntel MJ, Majumder S, Cuitino MC, Tang X, Srivastava A, Yu L, Wallace J, Mo X, Park M, Fernandez SA, Pilarski R, La Perle KM, Rosol TJ, Coppola V, Castrillon DH, Timmers C, Cohn DE, O'Malley DM, Backes F, Suarez AA, Goodfellow P, Chamberlin HM, Macrae ER, Shapiro CL, Ostrowski MC, Leone G.
Caserta E, et al. Among authors: karikomi mk.
Genes Dev. 2015 Aug 15;29(16):1707-20. doi: 10.1101/gad.262568.115.
Genes Dev. 2015.
PMID: 26302789
Free PMC article.
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