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Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.
Krupa P, Mozolewska MA, Wiśniewska M, Yin Y, He Y, Sieradzan AK, Ganzynkowicz R, Lipska AG, Karczyńska A, Ślusarz M, Ślusarz R, Giełdoń A, Czaplewski C, Jagieła D, Zaborowski B, Scheraga HA, Liwo A. Krupa P, et al. Among authors: karczynska a. Bioinformatics. 2016 Nov 1;32(21):3270-3278. doi: 10.1093/bioinformatics/btw404. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378298 Free PMC article.
Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.
Lubecka EA, Karczyńska AS, Lipska AG, Sieradzan AK, Ziȩba K, Sikorska C, Uciechowska U, Samsonov SA, Krupa P, Mozolewska MA, Golon Ł, Giełdoń A, Czaplewski C, Ślusarz R, Ślusarz M, Crivelli SN, Liwo A. Lubecka EA, et al. Among authors: karczynska as. J Mol Graph Model. 2019 Nov;92:154-166. doi: 10.1016/j.jmgm.2019.07.013. Epub 2019 Jul 26. J Mol Graph Model. 2019. PMID: 31376733
Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding.
Spodzieja M, Kuncewicz K, Sieradzan A, Karczyńska A, Iwaszkiewicz J, Cesson V, Węgrzyn K, Zhukov I, Maszota-Zieleniak M, Michielin O, Speiser DE, Zoete V, Derré L, Rodziewicz-Motowidło S. Spodzieja M, et al. Among authors: karczynska a. Int J Mol Sci. 2020 Jan 18;21(2):636. doi: 10.3390/ijms21020636. Int J Mol Sci. 2020. PMID: 31963646 Free PMC article.
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A. Fajardo JE, et al. Among authors: karczynska as. Proteins. 2020 Mar;88(3):540. doi: 10.1002/prot.25867. Epub 2020 Jan 3. Proteins. 2020. PMID: 31977133 No abstract available.
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.
Karczyńska AS, Ziȩba K, Uciechowska U, Mozolewska MA, Krupa P, Lubecka EA, Lipska AG, Sikorska C, Samsonov SA, Sieradzan AK, Giełdoń A, Liwo A, Ślusarz R, Ślusarz M, Lee J, Joo K, Czaplewski C. Karczyńska AS, et al. J Chem Inf Model. 2020 Mar 23;60(3):1844-1864. doi: 10.1021/acs.jcim.9b00864. Epub 2020 Feb 11. J Chem Inf Model. 2020. PMID: 31999919 Free PMC article.
Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers.
Liwo A, Czaplewski C, Sieradzan AK, Lubecka EA, Lipska AG, Golon Ł, Karczyńska A, Krupa P, Mozolewska MA, Makowski M, Ganzynkowicz R, Giełdoń A, Maciejczyk M. Liwo A, et al. Among authors: karczynska a. Prog Mol Biol Transl Sci. 2020;170:73-122. doi: 10.1016/bs.pmbts.2019.12.004. Epub 2020 Feb 24. Prog Mol Biol Transl Sci. 2020. PMID: 32145953
Truncation of Huia versabilis Bowman-Birk inhibitor increases its selectivity, matriptase-1 inhibitory activity and proteolytic stability.
Gitlin-Domagalska A, Dębowski D, Gucwa K, Starego D, Ptaszyńska N, Sieradzan A, Karczyńska A, Samsonov SA, Mangold M, Gütschow M, Łęgowska A, Rolka K. Gitlin-Domagalska A, et al. Among authors: karczynska a. Biochimie. 2020 Apr-May;171-172:178-186. doi: 10.1016/j.biochi.2020.03.006. Epub 2020 Mar 10. Biochimie. 2020. PMID: 32169666
21 results