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Glioblastomas acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion.
Cell. 2021 Apr 29;184(9):2454-2470.e26. doi: 10.1016/j.cell.2021.03.023. Epub 2021 Apr 14.
Cell. 2021.
PMID: 33857425
Free PMC article.
BPRMeth: a flexible Bioconductor package for modelling methylation profiles.
Kapourani CA, Sanguinetti G.
Kapourani CA, et al.
Bioinformatics. 2018 Jul 15;34(14):2485-2486. doi: 10.1093/bioinformatics/bty129.
Bioinformatics. 2018.
PMID: 29522078
Free PMC article.
Item in Clipboard
Multi-omics profiling of mouse gastrulation at single-cell resolution.
Argelaguet R, Clark SJ, Mohammed H, Stapel LC, Krueger C, Kapourani CA, Imaz-Rosshandler I, Lohoff T, Xiang Y, Hanna CW, Smallwood S, Ibarra-Soria X, Buettner F, Sanguinetti G, Xie W, Krueger F, Göttgens B, Rugg-Gunn PJ, Kelsey G, Dean W, Nichols J, Stegle O, Marioni JC, Reik W.
Argelaguet R, et al. Among authors: kapourani ca.
Nature. 2019 Dec;576(7787):487-491. doi: 10.1038/s41586-019-1825-8. Epub 2019 Dec 11.
Nature. 2019.
PMID: 31827285
Free PMC article.
Item in Clipboard
scMET: Bayesian modeling of DNA methylation heterogeneity at single-cell resolution.
Kapourani CA, Argelaguet R, Sanguinetti G, Vallejos CA.
Kapourani CA, et al.
Genome Biol. 2021 Apr 20;22(1):114. doi: 10.1186/s13059-021-02329-8.
Genome Biol. 2021.
PMID: 33879195
Free PMC article.
Item in Clipboard
Higher order methylation features for clustering and prediction in epigenomic studies.
Kapourani CA, Sanguinetti G.
Kapourani CA, et al.
Bioinformatics. 2016 Sep 1;32(17):i405-i412. doi: 10.1093/bioinformatics/btw432.
Bioinformatics. 2016.
PMID: 27587656
Item in Clipboard
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.
Clark SJ, Argelaguet R, Kapourani CA, Stubbs TM, Lee HJ, Alda-Catalinas C, Krueger F, Sanguinetti G, Kelsey G, Marioni JC, Stegle O, Reik W.
Clark SJ, et al. Among authors: kapourani ca.
Nat Commun. 2018 Feb 22;9(1):781. doi: 10.1038/s41467-018-03149-4.
Nat Commun. 2018.
PMID: 29472610
Free PMC article.
Item in Clipboard
Melissa: Bayesian clustering and imputation of single-cell methylomes.
Kapourani CA, Sanguinetti G.
Kapourani CA, et al.
Genome Biol. 2019 Mar 21;20(1):61. doi: 10.1186/s13059-019-1665-8.
Genome Biol. 2019.
PMID: 30898142
Free PMC article.
Item in Clipboard
Multimodal decoding of human liver regeneration.
Matchett KP, Wilson-Kanamori JR, Portman JR, Kapourani CA, Fercoq F, May S, Zajdel E, Beltran M, Sutherland EF, Mackey JBG, Brice M, Wilson GC, Wallace SJ, Kitto L, Younger NT, Dobie R, Mole DJ, Oniscu GC, Wigmore SJ, Ramachandran P, Vallejos CA, Carragher NO, Saeidinejad MM, Quaglia A, Jalan R, Simpson KJ, Kendall TJ, Rule JA, Lee WM, Hoare M, Weston CJ, Marioni JC, Teichmann SA, Bird TG, Carlin LM, Henderson NC.
Matchett KP, et al. Among authors: kapourani ca.
Nature. 2024 May 1. doi: 10.1038/s41586-024-07376-2. Online ahead of print.
Nature. 2024.
PMID: 38693268
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