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PPIT: an R package for inferring microbial taxonomy from nifH sequences.
Bioinformatics. 2021 Aug 25;37(16):2289-2298. doi: 10.1093/bioinformatics/btab100.
Bioinformatics. 2021.
PMID: 33580675
Evidence for phylogenetically and catabolically diverse active diazotrophs in deep-sea sediment.
Kapili BJ, Barnett SE, Buckley DH, Dekas AE.
Kapili BJ, et al.
ISME J. 2020 Apr;14(4):971-983. doi: 10.1038/s41396-019-0584-8. Epub 2020 Jan 6.
ISME J. 2020.
PMID: 31907368
Free PMC article.
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Rates and physicochemical drivers of microbial anabolic activity in deep-sea sediments and implications for deep time.
Meyer NR, Parada AE, Kapili BJ, Fortney JL, Dekas AE.
Meyer NR, et al. Among authors: kapili bj.
Environ Microbiol. 2022 Nov;24(11):5188-5201. doi: 10.1111/1462-2920.16183. Epub 2022 Sep 27.
Environ Microbiol. 2022.
PMID: 36054699
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Heteromeric transposase elements: generators of genomic islands across diverse bacteria.
Peters JE, Fricker AD, Kapili BJ, Petassi MT.
Peters JE, et al. Among authors: kapili bj.
Mol Microbiol. 2014 Sep;93(6):1084-92. doi: 10.1111/mmi.12740. Epub 2014 Aug 19.
Mol Microbiol. 2014.
PMID: 25091064
Free article.
Review.
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An Unusual Inverted Saline Microbial Mat Community in an Interdune Sabkha in the Rub' al Khali (the Empty Quarter), United Arab Emirates.
McKay CP, Rask JC, Detweiler AM, Bebout BM, Everroad RC, Lee JZ, Chanton JP, Mayer MH, Caraballo AA, Kapili B, Al-Awar M, Al-Farraj A.
McKay CP, et al.
PLoS One. 2016 Mar 16;11(3):e0150342. doi: 10.1371/journal.pone.0150342. eCollection 2016.
PLoS One. 2016.
PMID: 26982497
Free PMC article.
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Novel mechanisms of diversity generation in Acinetobacter baumannii resistance islands driven by Tn7-like elements.
Correa A 3rd, Shehreen S, Machado LC, Thesier J, Cunic LM, Petassi MT, Chu J, Kapili BJ, Jia Y, England KA, Peters JE.
Correa A 3rd, et al. Among authors: kapili bj.
Nucleic Acids Res. 2024 Apr 12;52(6):3180-3198. doi: 10.1093/nar/gkae129.
Nucleic Acids Res. 2024.
PMID: 38407477
Free PMC article.
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Autochthonous carbon loading of macroalgae stimulates benthic biological nitrogen fixation rates in shallow coastal marine sediments.
Raut Y, Barr CR, Paris ER, Kapili BJ, Dekas AE, Capone DG.
Raut Y, et al. Among authors: kapili bj.
Front Microbiol. 2024 Jan 5;14:1312843. doi: 10.3389/fmicb.2023.1312843. eCollection 2023.
Front Microbiol. 2024.
PMID: 38249476
Free PMC article.
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