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A proteomics sample metadata representation for multiomics integration and big data analysis.
Nat Commun. 2021 Oct 6;12(1):5854. doi: 10.1038/s41467-021-26111-3.
Nat Commun. 2021.
PMID: 34615866
Free PMC article.
Review.
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Perez-Riverol Y, Bai J, Bandla C, García-Seisdedos D, Hewapathirana S, Kamatchinathan S, Kundu DJ, Prakash A, Frericks-Zipper A, Eisenacher M, Walzer M, Wang S, Brazma A, Vizcaíno JA.
Perez-Riverol Y, et al. Among authors: kamatchinathan s.
Nucleic Acids Res. 2022 Jan 7;50(D1):D543-D552. doi: 10.1093/nar/gkab1038.
Nucleic Acids Res. 2022.
PMID: 34723319
Free PMC article.
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Open-source large language models in action: A bioinformatics chatbot for PRIDE database.
Bai J, Kamatchinathan S, Kundu DJ, Bandla C, Vizcaíno JA, Perez-Riverol Y.
Bai J, et al. Among authors: kamatchinathan s.
Proteomics. 2024 Mar 31:e2400005. doi: 10.1002/pmic.202400005. Online ahead of print.
Proteomics. 2024.
PMID: 38556628
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The ProteomeXchange consortium at 10 years: 2023 update.
Deutsch EW, Bandeira N, Perez-Riverol Y, Sharma V, Carver JJ, Mendoza L, Kundu DJ, Wang S, Bandla C, Kamatchinathan S, Hewapathirana S, Pullman BS, Wertz J, Sun Z, Kawano S, Okuda S, Watanabe Y, MacLean B, MacCoss MJ, Zhu Y, Ishihama Y, Vizcaíno JA.
Deutsch EW, et al. Among authors: kamatchinathan s.
Nucleic Acids Res. 2023 Jan 6;51(D1):D1539-D1548. doi: 10.1093/nar/gkac1040.
Nucleic Acids Res. 2023.
PMID: 36370099
Free PMC article.
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