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A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings.
Thorpe HA, Booton R, Kallonen T, Gibbon MJ, Couto N, Passet V, López-Fernández S, Rodrigues C, Matthews L, Mitchell S, Reeve R, David S, Merla C, Corbella M, Ferrari C, Comandatore F, Marone P, Brisse S, Sassera D, Corander J, Feil EJ. Thorpe HA, et al. Among authors: kallonen t. Nat Microbiol. 2022 Dec;7(12):2054-2067. doi: 10.1038/s41564-022-01263-0. Epub 2022 Nov 21. Nat Microbiol. 2022. PMID: 36411354 Free PMC article.
Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages.
Musicha P, Msefula CL, Mather AE, Chaguza C, Cain AK, Peno C, Kallonen T, Khonga M, Denis B, Gray KJ, Heyderman RS, Thomson NR, Everett DB, Feasey NA. Musicha P, et al. Among authors: kallonen t. J Antimicrob Chemother. 2019 May 1;74(5):1223-1232. doi: 10.1093/jac/dkz032. J Antimicrob Chemother. 2019. PMID: 30778540 Free PMC article.
Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study.
Kantele A, Kuenzli E, Dunn SJ, Dance DAB, Newton PN, Davong V, Mero S, Pakkanen SH, Neumayr A, Hatz C, Snaith A, Kallonen T, Corander J, McNally A. Kantele A, et al. Among authors: kallonen t. Lancet Microbe. 2021 Apr;2(4):e151-e158. doi: 10.1016/S2666-5247(20)30224-X. Lancet Microbe. 2021. PMID: 33821248 Free PMC article.
High-resolution sweep metagenomics using fast probabilistic inference.
Mäklin T, Kallonen T, David S, Boinett CJ, Pascoe B, Méric G, Aanensen DM, Feil EJ, Baker S, Parkhill J, Sheppard SK, Corander J, Honkela A. Mäklin T, et al. Among authors: kallonen t. Wellcome Open Res. 2021 Oct 8;5:14. doi: 10.12688/wellcomeopenres.15639.2. eCollection 2020. Wellcome Open Res. 2021. PMID: 34746439 Free PMC article.
Bacterial genomic epidemiology with mixed samples.
Mäklin T, Kallonen T, Alanko J, Samuelsen Ø, Hegstad K, Mäkinen V, Corander J, Heinz E, Honkela A. Mäklin T, et al. Among authors: kallonen t. Microb Genom. 2021 Nov;7(11):000691. doi: 10.1099/mgen.0.000691. Microb Genom. 2021. PMID: 34779765 Free PMC article.
Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study.
Pöntinen AK, Gladstone RA, Pesonen H, Pesonen M, Cléon F, Parcell BJ, Kallonen T, Simonsen GS, Croucher NJ, McNally A, Parkhill J, Johnsen PJ, Samuelsen Ø, Corander J. Pöntinen AK, et al. Among authors: kallonen t. Lancet Microbe. 2024 Feb;5(2):e142-e150. doi: 10.1016/S2666-5247(23)00292-6. Epub 2024 Jan 11. Lancet Microbe. 2024. PMID: 38219757 Free article.
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