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Mutant SF3B1 promotes malignancy in PDAC.
Simmler P, Ioannidi EI, Mengis T, Marquart KF, Asawa S, Van-Lehmann K, Kahles A, Thomas T, Schwerdel C, Aceto N, Rätsch G, Stoffel M, Schwank G. Simmler P, et al. Among authors: kahles a. Elife. 2023 Oct 12;12:e80683. doi: 10.7554/eLife.80683. Elife. 2023. PMID: 37823551 Free PMC article.
MMR: a tool for read multi-mapper resolution.
Kahles A, Behr J, Rätsch G. Kahles A, et al. Bioinformatics. 2016 Mar 1;32(5):770-2. doi: 10.1093/bioinformatics/btv624. Epub 2015 Oct 30. Bioinformatics. 2016. PMID: 26519503 Free PMC article.
Breaking ties between equally well mapping locations poses a severe problem not only during the alignment phase but also has significant impact on the results of downstream analyses. ...In addition, MMR decreases the alignment file sizes by more than 50%, and this leads to …
Breaking ties between equally well mapping locations poses a severe problem not only during the alignment phase but also has signific …
Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.
Hartmann L, Drewe-Boß P, Wießner T, Wagner G, Geue S, Lee HC, Obermüller DM, Kahles A, Behr J, Sinz FH, Rätsch G, Wachter A. Hartmann L, et al. Among authors: kahles a. Plant Cell. 2016 Nov;28(11):2715-2734. doi: 10.1105/tpc.16.00508. Epub 2016 Nov 1. Plant Cell. 2016. PMID: 27803310 Free PMC article.
Dynamic compression schemes for graph coloring.
Mustafa H, Schilken I, Karasikov M, Eickhoff C, Rätsch G, Kahles A. Mustafa H, et al. Among authors: kahles a. Bioinformatics. 2019 Feb 1;35(3):407-414. doi: 10.1093/bioinformatics/bty632. Bioinformatics. 2019. PMID: 30020403 Free PMC article.
Sparse Binary Relation Representations for Genome Graph Annotation.
Karasikov M, Mustafa H, Joudaki A, Javadzadeh-No S, Rätsch G, Kahles A. Karasikov M, et al. Among authors: kahles a. J Comput Biol. 2020 Apr;27(4):626-639. doi: 10.1089/cmb.2019.0324. Epub 2019 Dec 20. J Comput Biol. 2020. PMID: 31891531 Free PMC article.
SCIM: universal single-cell matching with unpaired feature sets.
Stark SG, Ficek J, Locatello F, Bonilla X, Chevrier S, Singer F; Tumor Profiler Consortium; Rätsch G, Lehmann KV. Stark SG, et al. Bioinformatics. 2020 Dec 30;36(Suppl_2):i919-i927. doi: 10.1093/bioinformatics/btaa843. Bioinformatics. 2020. PMID: 33381818 Free PMC article.
The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.
Irmisch A, Bonilla X, Chevrier S, Lehmann KV, Singer F, Toussaint NC, Esposito C, Mena J, Milani ES, Casanova R, Stekhoven DJ, Wegmann R, Jacob F, Sobottka B, Goetze S, Kuipers J, Sarabia Del Castillo J, Prummer M, Tuncel MA, Menzel U, Jacobs A, Engler S, Sivapatham S, Frei AL, Gut G, Ficek J, Miglino N; Tumor Profiler Consortium; Aebersold R, Bacac M, Beerenwinkel N, Beisel C, Bodenmiller B, Dummer R, Heinzelmann-Schwarz V, Koelzer VH, Manz MG, Moch H, Pelkmans L, Snijder B, Theocharides APA, Tolnay M, Wicki A, Wollscheid B, Rätsch G, Levesque MP. Irmisch A, et al. Cancer Cell. 2021 Mar 8;39(3):288-293. doi: 10.1016/j.ccell.2021.01.004. Epub 2021 Jan 21. Cancer Cell. 2021. PMID: 33482122 Free article.
Topology-based sparsification of graph annotations.
Danciu D, Karasikov M, Mustafa H, Kahles A, Rätsch G. Danciu D, et al. Among authors: kahles a. Bioinformatics. 2021 Jul 12;37(Suppl_1):i169-i176. doi: 10.1093/bioinformatics/btab330. Bioinformatics. 2021. PMID: 34252940 Free PMC article.
99 results