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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Among authors: kaderali l. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.
Host factor prioritization for pan-viral genetic perturbation screens using random intercept models and network propagation.
Dirmeier S, Dächert C, van Hemert M, Tas A, Ogando NS, van Kuppeveld F, Bartenschlager R, Kaderali L, Binder M, Beerenwinkel N. Dirmeier S, et al. Among authors: kaderali l. PLoS Comput Biol. 2020 Feb 10;16(2):e1007587. doi: 10.1371/journal.pcbi.1007587. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32040506 Free PMC article.
Evaluation of two rapid antigen tests to detect SARS-CoV-2 in a hospital setting.
Osterman A, Baldauf HM, Eletreby M, Wettengel JM, Afridi SQ, Fuchs T, Holzmann E, Maier A, Döring J, Grzimek-Koschewa N, Muenchhoff M, Protzer U, Kaderali L, Keppler OT. Osterman A, et al. Among authors: kaderali l. Med Microbiol Immunol. 2021 Feb;210(1):65-72. doi: 10.1007/s00430-020-00698-8. Epub 2021 Jan 16. Med Microbiol Immunol. 2021. PMID: 33452927 Free PMC article.
ITN-VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics.
Goettsch W, Beerenwinkel N, Deng L, Dölken L, Dutilh BE, Erhard F, Kaderali L, von Kleist M, Marquet R, Matthijnssens J, McCallin S, McMahon D, Rattei T, Van Rij RP, Robertson DL, Schwemmle M, Stern-Ginossar N, Marz M. Goettsch W, et al. Among authors: kaderali l. Viruses. 2021 Apr 27;13(5):766. doi: 10.3390/v13050766. Viruses. 2021. PMID: 33925452 Free PMC article.
Neighbourhood watch: genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020-2022.
Kohler C, King J, Stacker L, Goller KV, Moritz J, Pohlmann A, Nath N, Tzvetkova A, Rieck M, Paraskevopoulou S, Beslic D, Hölzer M, Fuchs S, Ziemann J, Kaderali L, Beer M, Hübner NO, Becker K. Kohler C, et al. Among authors: kaderali l. Emerg Microbes Infect. 2023 Dec;12(2):2245916. doi: 10.1080/22221751.2023.2245916. Emerg Microbes Infect. 2023. PMID: 37585712 Free PMC article.
In-depth profiling of COVID-19 risk factors and preventive measures in healthcare workers.
Wratil PR, Schmacke NA, Osterman A, Weinberger T, Rech J, Karakoc B, Zeilberger M, Steffen J, Mueller TT, Spaeth PM, Stern M, Albanese M, Thun H, Reinbold J, Sandmeyer B, Kressirer P, Grabein B, Falkai P, Adorjan K, Hornung V, Kaderali L, Klein M, Keppler OT. Wratil PR, et al. Among authors: kaderali l. Infection. 2022 Apr;50(2):381-394. doi: 10.1007/s15010-021-01672-z. Epub 2021 Aug 11. Infection. 2022. PMID: 34379308 Free PMC article.
Comparison of four commercial, automated antigen tests to detect SARS-CoV-2 variants of concern.
Osterman A, Iglhaut M, Lehner A, Späth P, Stern M, Autenrieth H, Muenchhoff M, Graf A, Krebs S, Blum H, Baiker A, Grzimek-Koschewa N, Protzer U, Kaderali L, Baldauf HM, Keppler OT. Osterman A, et al. Among authors: kaderali l. Med Microbiol Immunol. 2021 Dec;210(5-6):263-275. doi: 10.1007/s00430-021-00719-0. Epub 2021 Aug 20. Med Microbiol Immunol. 2021. PMID: 34415422 Free PMC article.
Evidence for increased SARS-CoV-2 susceptibility and COVID-19 severity related to pre-existing immunity to seasonal coronaviruses.
Wratil PR, Schmacke NA, Karakoc B, Dulovic A, Junker D, Becker M, Rothbauer U, Osterman A, Spaeth PM, Ruhle A, Gapp M, Schneider S, Muenchhoff M, Hellmuth JC, Scherer C, Mayerle J, Reincke M, Behr J, Kääb S, Zwissler B, von Bergwelt-Baildon M, Eberle J, Kaderali L, Schneiderhan-Marra N, Hornung V, Keppler OT. Wratil PR, et al. Among authors: kaderali l. Cell Rep. 2021 Dec 28;37(13):110169. doi: 10.1016/j.celrep.2021.110169. Epub 2021 Dec 7. Cell Rep. 2021. PMID: 34932974 Free PMC article.
Impaired detection of omicron by SARS-CoV-2 rapid antigen tests.
Osterman A, Badell I, Basara E, Stern M, Kriesel F, Eletreby M, Öztan GN, Huber M, Autenrieth H, Knabe R, Späth PM, Muenchhoff M, Graf A, Krebs S, Blum H, Durner J, Czibere L, Dächert C, Kaderali L, Baldauf HM, Keppler OT. Osterman A, et al. Among authors: kaderali l. Med Microbiol Immunol. 2022 Jun;211(2-3):105-117. doi: 10.1007/s00430-022-00730-z. Epub 2022 Feb 20. Med Microbiol Immunol. 2022. PMID: 35187580 Free PMC article.
Convergent use of phosphatidic acid for hepatitis C virus and SARS-CoV-2 replication organelle formation.
Tabata K, Prasad V, Paul D, Lee JY, Pham MT, Twu WI, Neufeldt CJ, Cortese M, Cerikan B, Stahl Y, Joecks S, Tran CS, Lüchtenborg C, V'kovski P, Hörmann K, Müller AC, Zitzmann C, Haselmann U, Beneke J, Kaderali L, Erfle H, Thiel V, Lohmann V, Superti-Furga G, Brügger B, Bartenschlager R. Tabata K, et al. Among authors: kaderali l. Nat Commun. 2021 Dec 14;12(1):7276. doi: 10.1038/s41467-021-27511-1. Nat Commun. 2021. PMID: 34907161 Free PMC article.
148 results