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The contrasting phylodynamics of human influenza B viruses.
Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YC, Halpin R, Lee RT, Deng YM, Gunalan V, Lin X, Stockwell TB, Fedorova NB, Zhou B, Spirason N, Kühnert D, Bošková V, Stadler T, Costa AM, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth DE, Smith GJ, Barr IG. Vijaykrishna D, et al. Among authors: kuhnert d. Elife. 2015 Jan 16;4:e05055. doi: 10.7554/eLife.05055. Elife. 2015. PMID: 25594904 Free PMC article.
Influenza a virus migration and persistence in North American wild birds.
Bahl J, Krauss S, Kühnert D, Fourment M, Raven G, Pryor SP, Niles LJ, Danner A, Walker D, Mendenhall IH, Su YC, Dugan VG, Halpin RA, Stockwell TB, Webby RJ, Wentworth DE, Drummond AJ, Smith GJ, Webster RG. Bahl J, et al. Among authors: kuhnert d. PLoS Pathog. 2013;9(8):e1003570. doi: 10.1371/journal.ppat.1003570. Epub 2013 Aug 29. PLoS Pathog. 2013. PMID: 24009503 Free PMC article.
Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.
Geoghegan JL, Tan le V, Kühnert D, Halpin RA, Lin X, Simenauer A, Akopov A, Das SR, Stockwell TB, Shrivastava S, Ngoc NM, Uyen le TT, Tuyen NT, Thanh TT, Hang VT, Qui PT, Hung NT, Khanh TH, Thinh le Q, Nhan le NT, Van HM, Viet do C, Tuan HM, Viet HL, Hien TT, Chau NV, Thwaites G, Grenfell BT, Stadler T, Wentworth DE, Holmes EC, Van Doorn HR. Geoghegan JL, et al. Among authors: kuhnert d. J Virol. 2015 Sep;89(17):8871-9. doi: 10.1128/JVI.00706-15. Epub 2015 Jun 17. J Virol. 2015. PMID: 26085170 Free PMC article.
Taming the BEAST-A Community Teaching Material Resource for BEAST 2.
Barido-Sottani J, Bošková V, Plessis LD, Kühnert D, Magnus C, Mitov V, Müller NF, PecErska J, Rasmussen DA, Zhang C, Drummond AJ, Heath TA, Pybus OG, Vaughan TG, Stadler T. Barido-Sottani J, et al. Among authors: kuhnert d. Syst Biol. 2018 Jan 1;67(1):170-174. doi: 10.1093/sysbio/syx060. Syst Biol. 2018. PMID: 28673048 Free PMC article.
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
Kühnert D, Kouyos R, Shirreff G, Pečerska J, Scherrer AU, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Stadler T, Bonhoeffer S; Swiss HIV Cohort Study. Kühnert D, et al. PLoS Pathog. 2018 Feb 20;14(2):e1006895. doi: 10.1371/journal.ppat.1006895. eCollection 2018 Feb. PLoS Pathog. 2018. PMID: 29462208 Free PMC article.
60 results