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On the way to plant data commons - a genotyping use case.
Feser M, König P, Fiebig A, Arend D, Lange M, Scholz U. Feser M, et al. Among authors: konig p. J Integr Bioinform. 2022 Sep 5;19(4):20220033. doi: 10.1515/jib-2022-0033. eCollection 2022 Dec 1. J Integr Bioinform. 2022. PMID: 36065132 Free PMC article.
Genebank genomics highlights the diversity of a global barley collection.
Milner SG, Jost M, Taketa S, Mazón ER, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam RK, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger SG, Keller B, Jiang Y, González MY, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif JC, Scholz U, Mascher M, Stein N. Milner SG, et al. Among authors: konig p. Nat Genet. 2019 Feb;51(2):319-326. doi: 10.1038/s41588-018-0266-x. Epub 2018 Nov 12. Nat Genet. 2019. PMID: 30420647
BrAPI-an application programming interface for plant breeding applications.
Selby P, Abbeloos R, Backlund JE, Basterrechea Salido M, Bauchet G, Benites-Alfaro OE, Birkett C, Calaminos VC, Carceller P, Cornut G, Vasques Costa B, Edwards JD, Finkers R, Yanxin Gao S, Ghaffar M, Glaser P, Guignon V, Hok P, Kilian A, König P, Lagare JEB, Lange M, Laporte MA, Larmande P, LeBauer DS, Lyon DA, Marshall DS, Matthews D, Milne I, Mistry N, Morales N, Mueller LA, Neveu P, Papoutsoglou E, Pearce B, Perez-Masias I, Pommier C, Ramírez-González RH, Rathore A, Raquel AM, Raubach S, Rife T, Robbins K, Rouard M, Sarma C, Scholz U, Sempéré G, Shaw PD, Simon R, Soldevilla N, Stephen G, Sun Q, Tovar C, Uszynski G, Verouden M; BrAPI consortium. Selby P, et al. Among authors: konig p. Bioinformatics. 2019 Oct 15;35(20):4147-4155. doi: 10.1093/bioinformatics/btz190. Bioinformatics. 2019. PMID: 30903186 Free PMC article.
Programmatic Access to FAIRified Digital Plant Genetic Resources.
Ghaffar M, Schüler D, König P, Arend D, Junker A, Scholz U, Lange M. Ghaffar M, et al. Among authors: konig p. J Integr Bioinform. 2020 Jan 8;16(4):20190060. doi: 10.1515/jib-2019-0060. J Integr Bioinform. 2020. PMID: 31913851 Free PMC article.
BRIDGE - A Visual Analytics Web Tool for Barley Genebank Genomics.
König P, Beier S, Basterrechea M, Schüler D, Arend D, Mascher M, Stein N, Scholz U, Lange M. König P, et al. Front Plant Sci. 2020 Jun 11;11:701. doi: 10.3389/fpls.2020.00701. eCollection 2020. Front Plant Sci. 2020. PMID: 32595658 Free PMC article.
isa4j: a scalable Java library for creating ISA-Tab metadata.
Psaroudakis D, Liu F, König P, Scholz U, Junker A, Lange M, Arend D. Psaroudakis D, et al. Among authors: konig p. F1000Res. 2020 Dec 3;9:ELIXIR-1388. doi: 10.12688/f1000research.27188.1. eCollection 2020. F1000Res. 2020. PMID: 33728038 Free PMC article.
761 results